SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167331

Length: 339 nt

UniGene Fasta

>sp_v3.0_unigene167331
ATACTTCGACTCTGATGAAGGCGCGGAGCATTTTGCCGCAGTTCACAAGATCTTCGGAGCTAGCAATGTATCCAAGCTTTTACTGCATATCCCCATACCCGAGCGCTGCGAGGCAGTTGTCACCATATCTTACGAGGCAGAGGCTCGACTACGAGATCCCGTCTATGGCTGCGTTGCGCACATTTTCGCCTTGCAACAACAGGTTGCGAGTTTGCAGGCCGAGCTGACATTCGTGCAAGCACAGCTAGCGAGCCGCTTGTCATCCGGATCACCATCAACCTCTATAAATATTCCTGTCATGTCTTCGTCGTCGTACAGTCAGCATCCACATCAGTTCCC

Ace file of the UniGene sp_v3.0_unigene167331

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RDE1_RICCO	-	-	8.0e-32	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	LOB domain-containing protein, putative	-	-	4.464e-31	-

Source	Gene names
Sma3	ARL1; ASL11; ASL15; ASL16; ASL17; ASL18; ASL19; ASL20; ASL21; ASL22; ASL23; ASL24; ASL3; ASL4; ASL5; B1164G01.6; CRL1; CRLL1; CRLL2; GSVIVT00003846001; GSVIVT00007498001; GSVIVT00007499001; GSVIVT00016010001; GSVIVT00018439001; GSVIVT00020677001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monolayer-surrounded lipid storage body outer lipid monolayer	GO:0034430	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	xylem development	GO:0010089	Biological Process	-
Sma3	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	-
Sma3	lateral root formation	GO:0010311	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oleosin	IPR000136	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Lateral organ boundaries, LOB	IPR004883	-	-
Sma3	Pre-SET domain	IPR007728	-	-
Sma3	Uncharacterised conserved protein UCP038127, LOB	IPR017394	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45420.1	LBD18 LOB domain-containing protein 18 chr2:18718601-18720445 FORWARD LENGTH=262	3.0e-39	73%
RefSeq	Arabidopsis thaliana	NP_850436.1	LOB domain-containing protein 18 [Arabidopsis thaliana]	4.0e-39	73%
RefSeq	Populus trichocarpa	XP_002320063.1	predicted protein [Populus trichocarpa]	3.00004e-41	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9D3

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 112 - 219

Fln protein: YFDSDEGAEHFAAVHKIFGASNVSKLLLHIPIPERCEAVVTISYEAEARLRDPVYGCVAHIFALQQQVASLQAELTFVQAQLASRLSSGSPSTSINIPVMSSSSYSQHPHQF

Protein Length: 113

Fln nts: ATACTTCGACTCTGATGAAGGCGCGGAGCATTTTGCCGCAGTTCACAAGATCTTCGGAGCTAGCAATGTATCCAAGCTTTTACTGCATATCCCCATACCCGAGCGCTGCGAGGCAGTTGTCACCATATCTTACGAGGCAGAGGCTCGACTACGAGATCCCGTCTATGGCTGCGTTGCGCACATTTTCGCCTTGCAACAACAGGTTGCGAGTTTGCAGGCCGAGCTGACATTCGTGCAAGCACAGCTAGCGAGCCGCTTGTCATCCGGATCACCATCAACCTCTATAAATATTCCTGTCATGTCTTCGTCGTCGTACAGTCAGCATCCACATCAGTTCCC

Fln Alignment:

HIF1XHV01A3G0W___YFDSDEGAEHFAAVHKIFGASNVSKLLLHIPIPERCEAVVTISYEAEARLRDPVYGCVAHIFALQQQVASLQAELTFVQAQLASRLSSGSPSTSINIPVMSSSSYSQHPHQF
D5A9D3________________YFDSDEGAENFAAVHKIFGASNVSKLLQHIPIPERSEAVVTISYEAQARLRDPVYGCVAHIFALQQQVASLQAELTFVQAQLASRVASGSASTSMNFPVMSSSSYNQHPHQF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain