SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167327

Length: 187 nt

UniGene Fasta

>sp_v3.0_unigene167327
GATATTTATGCAGAAGGCTTAAAGATTGGAGGTGTTCTTTGTACTTCCACCTATAGCTCAAAAAACTTTAATGTCACTGTTGGGATTGGATTAAACTTGCATAACGAGCAACCTACAACATGTTTGAATTCATTACTACAGAAATCAACAACTAATACACATATCTTACGAAAGGAAGAGCTTCTGG

Ace file of the UniGene sp_v3.0_unigene167327

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	holocarboxylase synthetase 1 [Arabidopsis thaliana]	-	-	5.0e-16	58%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	61%

Source	Gene names
Sma3	At1g37150; At2g25710; F28L22.1; PHYPADRAFT_143161; RCOM_1032390; hcs1; hcs2;

Source	GOs	Term	Type	e value	Identity
Sma3	biotin-[acetyl-CoA-carboxylase] ligase activity	GO:0004077	Molecular Function	0.0	-
Sma3	protein modification process	GO:0006464	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Biotin protein ligase, C-terminal	IPR003142	-	-
Sma3	Biotin/lipoate A/B protein ligase	IPR004143	-	-
Sma3	Biotin--acetyl-CoA-carboxylase ligase	IPR004408	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G25710.1	HCS1 holocarboxylase synthase 1 chr2:10952719-10955061 FORWARD LENGTH=367	9.0e-22	58%
RefSeq	Arabidopsis thaliana	NP_565605.1	holocarboxylase synthase 1 [Arabidopsis thaliana]	1.0e-21	58%
RefSeq	Populus trichocarpa	XP_002307419.1	predicted protein [Populus trichocarpa]	2.0e-19	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TBH5

Fln msg: Distance to subject end: 95 aas, your sequence is shorter than subject: 62 - 310

Fln protein: DIYAEGLKIGGVLCTSTYSSKNFNVTVGIGLNLHNEQPTTCLNSLLQKSTTNTHILRKEELL

Protein Length: 63

Fln nts: GATATTTATGCAGAAGGCTTAAAGATTGGAGGTGTTCTTTGTACTTCCACCTATAGCTCAAAAAACTTTAATGTCACTGTTGGGATTGGATTAAACTTGCATAACGAGCAACCTACAACATGTTTGAATTCATTACTACAGAAATCAACAACTAATACACATATCTTACGAAAGGAAGAGCTTCTGG

Fln Alignment:

HIF1XHV01CE4PA___DIYAEGLKIGGVLCTSTYSSKNFNVTVGIGLNLHNEQPTTCLNSLLQKSTTNTHILRKEELL
A9TBH5________________DLYAKGLKVGGVLCTSTYSSKKFNISLGVGLNVGNKQPTTCLNALLEEINEEAPSLPRDELL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain