SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167323

Length: 211 nt

UniGene Fasta

>sp_v3.0_unigene167323
TCAACAACCTTGGAATGCTTGGGATTACTTTGCTACTTTGGTTTGCACAACAGGCATTGTGTTTGCTTACTTTGCAGATACTCAGCTCTATAATTTTGTTTGCAAGAACAAGATGTTAAGGGATCTGGGTGTCCCAGCTGAACCCATTCTCGACAAGGGATTATGGGGCATTTCTCGGCATCCAAATTACTTTGGAGAGCAGCTCTGGTGG

Ace file of the UniGene sp_v3.0_unigene167323

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	oxidoreductase, acting on the CH-CH group of donors	-	-	2.0e-19	59%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	64%

Source	Gene names
Sma3	At2g46890; B0616E02-H0507E05.2; GSVIVT00026211001; OSJNBa0094O15.17; OSJNBb0004G23.3; Os04g0105300; OsI_14563; OsJ_13510; PHYPADRAFT_162235; POPTRDRAFT_834815; RCOM_1341620;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	oxidoreductase activity, acting on the CH-CH group of donors	GO:0016627	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal	IPR001104	-	0.0	-
Sma3	Protein of unknown function DUF1295	IPR010721	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G46890.1	Protein of unknown function (DUF1295) chr2:19266879-19268134 REVERSE LENGTH=322	5.0e-26	59%
RefSeq	Arabidopsis thaliana	NP_182212.1	uncharacterized protein [Arabidopsis thaliana]	6.0e-26	59%
RefSeq	Populus trichocarpa	XP_002320918.1	predicted protein [Populus trichocarpa]	3.0e-28	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9S1I7

Fln msg: Distance to subject end: 70 aas, your sequence is shorter than subject: 70 - 332

Fln protein: QQPWNAWDYFATLVCTTGIVFAYFADTQLYNFVCKNKMLRDLGVPAEPILDKGLWGISRHPNYFGEQLWW

Protein Length: 71

Fln nts: TCAACAACCTTGGAATGCTTGGGATTACTTTGCTACTTTGGTTTGCACAACAGGCATTGTGTTTGCTTACTTTGCAGATACTCAGCTCTATAATTTTGTTTGCAAGAACAAGATGTTAAGGGATCTGGGTGTCCCAGCTGAACCCATTCTCGACAAGGGATTATGGGGCATTTCTCGGCATCCAAATTACTTTGGAGAGCAGCTCTGGTGG

Fln Alignment:

HIF1XHV01B57BG___QQPWNAWDYFATLVCTTGIVFAYFADTQLYNFVCKNKMLRDLGVPAEPILDKGLWGISRHPNYFGEQLWW
A9S1I7________________QTPWNTWDTIACFLCATGIVLAYFADTQLHMFMSKNQNLRDLGAPPIPVLQEGVWRYSRHPNYVGEQLWW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain