SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167317

Length: 261 nt

UniGene Fasta

>sp_v3.0_unigene167317
CCCAGTTTGTGATCTGGATGCATACTTGCGCAAATTTTGGACTCCCGGAGACGCGAGGAGCATGTATAATGCAGAAAAGCGTGGAAAGCGGCAAGTGATGATCAGGCCATCATCGAAAGTTATCATCAAGTTCCTTCAAGTCATGCAAAAGCATGGTTATATTGGAGAGTTTGAGCTAGTTGATGATCATAGAGCAGGTAAAATTGTTGTAGAGCTAAATGGAAGGCTCAACAAGTGTGGAGTAATCAGTCCTCGTTTTAA

Ace file of the UniGene sp_v3.0_unigene167317

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S15a-4 [Arabidopsis thaliana] sp\|Q9LX88.3\|R15A4_ARATH RecName: Full=40S ribosomal protein S15a-4 emb\|CAB90931.1\| cytoplasmic ribosomal protein S15a-like [Arabidopsis thaliana] gb\|AAK76511.1\| putative cytoplasmic ribosomal protein S15	-	-	1.0e-29	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	30S ribosomal protein S8, putative	-	-	2.464e-08	-

Source	Gene names
Sma3	AT1G07770; At1g07770; At2g39590; At3g46040; CHLREDRAFT_59755; F12L6.25; F12M12_10; MICPUCDRAFT_31862; MICPUN_107532; OJ1559_F09.109; OSTLU_40222; Os02g0478600; Os07g0208000; OsI_07208; OsI_25335; OsJ_06729; OsJ_23513; Ot01g02370; P0527E02.35; PHATRDRAFT_2

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8	IPR000630	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59850.1	Ribosomal protein S8 family protein chr5:24112499-24113084 REVERSE LENGTH=130	4.00001e-40	94%
RefSeq	Arabidopsis thaliana	NP_172256.1	40S ribosomal protein S15a-1 [Arabidopsis thaliana]	5.0e-40	94%
RefSeq	Populus trichocarpa	XP_002304434.1	predicted protein [Populus trichocarpa]	8.99998e-41	95%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN71

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 66 - 130

Fln protein: MYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRF

Protein Length: 67

Fln nts: CCCAGTTTGTGATCTGGATGCATACTTGCGCAAATTTTGGACTCCCGGAGACGCGAGGAGC_-_ATGTATAATGCAGAAAAGCGTGGAAAGCGGCAAGTGATGATCAGGCCATCATCGAAAGTTATCATCAAGTTCCTTCAAGTCATGCAAAAGCATGGTTATATTGGAGAGTTTGAGCTAGTTGATGATCATAGAGCAGGTAAAATTGTTGTAGAGCTAAATGGAAGGCTCAACAAGTGTGGAGTAATCAGTCCTCGTTTTAA

Fln Alignment:

HIF1XHV01BQDQ6___RSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRF
A9NN71________________RSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain