SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167310

Length: 326 nt

UniGene Fasta

>sp_v3.0_unigene167310
ATACAACACTGTTATTGATGGTCTTGGCAAAGAAGGCAAGCTTCAGGAAGCTCTCGGGTTATTAGATGTTATGGTGAATATAGGCATTCCACCTGATCAAATAACATACAGTACACTTATAAATGGATTTTGCAGAGCGGATAAGCCGGAGAAGGCAGAGGAGCTTCTTCGAGAGATGCCAGAGAAAGGTTGCAGGCCTGATCTAGTTAGTTATAATACATTAATACACGGGCTTTGCAAGCATAATAGGATAGACGAAGCTCACCAGATCTTCTATGAGATGCAAGGCCAGGGTCAGAGCCCTGATATTATCACATACACCACAT

Ace file of the UniGene sp_v3.0_unigene167310

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os10g0497300 protein n=6 Tax=Oryza sativa RepID=Q76C22_ORYSJ	-	-	5.0e-24	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	PPR protein	-	-	1.449e-12	-

Source	Gene names
Sma3	At1g63400; F2K11.22; LOC_Os10g35240; LOC_Os10g35790; OSJNBa0017E08.17; OSJNBa0017E08.19; OSJNBa0041P03.12; OSJNBa0078O01.29; Os10g0495200; Os10g0497300; Os10g0501700; OsJ_32019; OsJ_32033; OsJ_32035; OsJ_32064; PPR683; PPR762; PPR794; PPR8-2; PPR8-3; RCOM

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3		GO:0008415	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phospholipid/glycerol acyltransferase	IPR002123	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR018111	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G63400.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:23507320-23509053 FORWARD LENGTH=577	5.0e-27	48%
RefSeq	Arabidopsis thaliana	NP_176529.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	7.0e-27	48%
RefSeq	Populus trichocarpa	XP_002319601.1	predicted protein [Populus trichocarpa]	3.0e-28	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAH0

Fln msg: Distance to subject end: 68 aas, your sequence is shorter than subject: 108 - 486

Fln protein: YNTVIDGLGKEGKLQEALGLLDVMVNIGIPPDQITYSTLINGFCRADKPEKAEELLREMPEKGCRPDLVSYNTLIHGLCKHNRIDEAHQIFYEMQGQGQSPDIITYTT

Protein Length: 109

Fln nts: ATACAACACTGTTATTGATGGTCTTGGCAAAGAAGGCAAGCTTCAGGAAGCTCTCGGGTTATTAGATGTTATGGTGAATATAGGCATTCCACCTGATCAAATAACATACAGTACACTTATAAATGGATTTTGCAGAGCGGATAAGCCGGAGAAGGCAGAGGAGCTTCTTCGAGAGATGCCAGAGAAAGGTTGCAGGCCTGATCTAGTTAGTTATAATACATTAATACACGGGCTTTGCAAGCATAATAGGATAGACGAAGCTCACCAGATCTTCTATGAGATGCAAGGCCAGGGTCAGAGCCCTGATATTATCACATACACCACAT

Fln Alignment:

HIF1XHV01AWTQ6___YNTVIDGLGKEGKLQEALGLLDVMVNIGIPPDQITYSTLINGFCRADKPEKAEELLREMPEKGCRPDLVSYNTLIHGLCKHNRIDEAHQIFYEMQGQGQSPDIITY
D5AAH0________________YNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain