SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167305

Length: 156 nt

UniGene Fasta

>sp_v3.0_unigene167305
CCTACTCGTGTAAAAAACCGCACATGCAATCTGCACGTTGTCAAGTTGAAGGTTGACAAATGCAGATCTTACGAGTTCAAAAGACTACCATCGCAGGCACAAAGTTTGCGAGATCCATTCCAAGTCTGCCAAAGTCATGGTGGCTGGTCTTGAGCA

Ace file of the UniGene sp_v3.0_unigene167305

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SBP-domain protein 13 [Physcomitrella patens]	-	-	1.0e-06	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%

Source	Gene names
Sma3	GSVIVT00017032001; VITISV_037586; VITISV_040028;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, SBP-box	IPR004333	-	0.0	-
Sma3		IPR015706	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002330105.1	predicted protein, partial [Populus trichocarpa]	2.0e-11	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSA8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 84 aas, your sequence is shorter than subject: 51 - 198

Fln protein: LLV*KTAHAICTLSS*RLTNADLTSSKDYHRRHKVCEIHSKSAKVMVAGLE

Protein Length: 52

Fln nts: CCTACTCGTGTAAAAAACCGCACATGCAATCTGCACGTTGTCAAGTTGAAGGTTGACAAATGCAGATCTTACGAGTTCAAAAGACTACCATCGCAGGCACAAAGTTTGCGAGATCCATTCCAAGTCTGCCAAAGTCATGGTGGCTGGTCTTGAGCA

Fln Alignment:

HIF1XHV01B6VIK___ADLTSSKDYHRRHKVCEIHSKSAKVMVAGLE
A9NSA8________________ADLADAKEYYRRHRVCEQHSKARVVLVLGLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain