SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167163

Length: 152 nt

UniGene Fasta

>sp_v3.0_unigene167163
CCTGTATTCGCCACAGCATTTAGTCCACTCATGATGATAATAGTGGCAGTCATGGGCTCCATTATTCTTGCTGAGACCATTTACTTGGGGAGTGTGTTGGGAGCAATTCTGATCGTCGTGGGTCTGTATGCTGTGCTGTGGGGCAAAGTCAA

Ace file of the UniGene sp_v3.0_unigene167163

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nodulin-like protein (Fragment) n=1 Tax=Plantago major RepID=Q5ZFS7_PLAMJ	-	-	7.0e-16	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Nodulin-like protein	-	-	5.21e-24	-

Source	Gene names
Sma3	AT4g08300; At2g37450; At2g37450/F3G5.24; At2g37460; At2g37460/F3G5.25; At2g39510; At4g08300; GSVIVT00002051001; GSVIVT00015367001; GSVIVT00015368001; GSVIVT00015369001; GSVIVT00023132001; GSVIVT00023303001; H0525E10.16; H0701F11.7; LOC_Os10g14920; MtN21;

Source	GOs	Term	Type	e value	Identity
Sma3	membrane	GO:0016020	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G07050.1	nodulin MtN21 /EamA-like transporter family protein chr5:2191533-2193416 REVERSE LENGTH=402	9.0e-22	81%
RefSeq	Arabidopsis thaliana	NP_196322.3	nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]	1.0e-21	81%
RefSeq	Populus trichocarpa	XP_002323220.1	predicted protein, partial [Populus trichocarpa]	7.0e-22	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM15

Fln msg: Distance to subject end: 69 aas, your sequence is shorter than subject: 50 - 406

Fln protein: PVFATAFSPLMMIIVAVMGSIILAETIYLGSVLGAILIVVGLYAVLWGKV

Protein Length: 51

Fln nts: CCTGTATTCGCCACAGCATTTAGTCCACTCATGATGATAATAGTGGCAGTCATGGGCTCCATTATTCTTGCTGAGACCATTTACTTGGGGAGTGTGTTGGGAGCAATTCTGATCGTCGTGGGTCTGTATGCTGTGCTGTGGGGCAAAGTCAA

Fln Alignment:

HLKU4M003FXVT8___PVFATAFSPLMMIIVAVMGSIILAETIYLGSVLGAILIVVGLYAVLWGKV
B8LM15________________PVFATAFSPLMMIIVAVMGSIILAETIYLGSVLGAILIVVGLYAVLWGKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain