SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167134

Length: 332 nt

UniGene Fasta

>sp_v3.0_unigene167134
CCTCCAACACATCGATCTACAGGGCTGTCATAATTTGGAGAGGCTACCAGATTCCTTCTGTAATTTGACGGACCTCCGACATATCAATCTCTCAGGTTGCCACGATCTGCAGAGGCTGCCCGATTCCTTTGGTGAATTGATATACCTCCAACACATTGATCTGCAGGGCTGCCACAATTTGGAGGAGCTGCCGACTACTTTTGGTAATCTCATGAACCTGCTACATATCAATCTCTCAAATTGCCATGATTTGGAAAGGCTGCCGGAGTCCTTTGGTAATTTAAGTAACCTCCAACACATCGATCTCTCAGGGTGCCATAATTTGGAGAGGC

Ace file of the UniGene sp_v3.0_unigene167134

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I9_PINTA	-	-	0.0	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	NBS/LRR	-	-	6.113e-09	-

Source	Gene names
Sma3	At1g69550; F10D13_24; rga S-9201;

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) chr1:26148836-26153374 REVERSE LENGTH=1400	8.0e-26	49%
RefSeq	Arabidopsis thaliana	NP_564971.2	TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]	1.0e-25	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW11

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 110 - 495

Fln protein: LQHIDLQGCHNLERLPDSFCNLTDLRHINLSGCHDLQRLPDSFGELIYLQHIDLQGCHNLEELPTTFGNLMNLLHINLSNCHDLERLPESFGNLSNLQHIDLSGCHNLER

Protein Length: 111

Fln nts: CCTCCAACACATCGATCTACAGGGCTGTCATAATTTGGAGAGGCTACCAGATTCCTTCTGTAATTTGACGGACCTCCGACATATCAATCTCTCAGGTTGCCACGATCTGCAGAGGCTGCCCGATTCCTTTGGTGAATTGATATACCTCCAACACATTGATCTGCAGGGCTGCCACAATTTGGAGGAGCTGCCGACTACTTTTGGTAATCTCATGAACCTGCTACATATCAATCTCTCAAATTGCCATGATTTGGAAAGGCTGCCGGAGTCCTTTGGTAATTTAAGTAACCTCCAACACATCGATCTCTCAGGGTGCCATAATTTGGAGAGGC

Fln Alignment:

HLKU4M003FI6LZ___LQHIDLQGCHNLERLPDSFCNLTDL----------RHINLSGCHDLQRLPDSFGELIYLQHIDLQGCHNLEELPTTFGNLMNLLHINLSNCHDLERLPESFGNLSNLQHIDLSGCHNLER
A9NW11________________LQHIDLRGCHNLESLPDSFGELWDLPYSFGEPWDLRHINLSGCHDLQRLPDSFVNLRYLQHIDLQGCHNLQSLPDGFGDLRNLDHVNLSNCHDLEWLPDSFGNLRNLQYIDLSGCHNLER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain