SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166993

Length: 355 nt

UniGene Fasta

>sp_v3.0_unigene166993
GGAATGGCGGCCGCAACAAGCATGGGCGTGGCCATGTTAAGTTCATTCGCTGCTCCAATTGCGGCAGATGCACTCCTAAGGCCGTGAAGAGGTTTCTAGTTCGAAACATAGTCGAACAAGCTGCCGTGCGTGATGTTCAGGAGGCGTGTGTTAACGATGGATACATGCTGCCAAAGCTTTACGCAAAGATGCAGTACTGCGTGTCCTGTGCCATTCACTCTCATGTTGTCCGCGTTCGCTCTCGGACTGAACGCCGCAAGCGTGACCCCCCACAGCGTTTTAGACGCCGGGAGAAGGTCCTAGGCCTGGGCAAGGTCCTCGCCCAGGTGTCACAAATCCACAGGCTGGTCCTCGG

Ace file of the UniGene sp_v3.0_unigene166993

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein S26 [Pisum sativum]	-	-	5.0e-33	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S26e	IPR000892	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G56340.1	Ribosomal protein S26e family protein chr3:20892309-20893343 REVERSE LENGTH=130	7.0e-40	81%
RefSeq	Arabidopsis thaliana	NP_191193.1	40S ribosomal protein S26-3 [Arabidopsis thaliana]	8.99999e-40	81%
RefSeq	Populus trichocarpa	XP_002319327.1	predicted protein [Populus trichocarpa]	9.94922e-44	88%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR90

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, atg_distance in limit (1-15): atg_distance = 7, W2: There is no M at the beginning,

Fln protein: NGGRNKHGRGHVKFIRCSNCGRCTPKAVKRFLVRNIVEQAAVRDVQEACVNDGYMLPKLYAKMQYCVSCAIHSHVVRVRSRTERRKRDPPQRFRRREKVLGLGKVLAQVSQIHRLVL

Protein Length: 118

Fln nts: GGA_-_ATGGCGGCCGCAACAAGCATGGGCGTGGCCATGTTAAGTTCATTCGCTGCTCCAATTGCGGCAGATGCACTCCTAAGGCCGTGAAGAGGTTTCTAGTTCGAAACATAGTCGAACAAGCTGCCGTGCGTGATGTTCAGGAGGCGTGTGTTAACGATGGATACATGCTGCCAAAGCTTTACGCAAAGATGCAGTACTGCGTGTCCTGTGCCATTCACTCTCATGTTGTCCGCGTTCGCTCTCGGACTGAACGCCGCAAGCGTGACCCCCCACAGCGTTTTAGACGCCGGGAGAAGGTCCTAGGCCTGGGCAAGGTCCTCGCCCAGGTGTCACAAATCCACAGGCTGGTCCTCGG

Fln Alignment:

HLKU4M003FR9IY___NGGRNKHGRGHVKFIRCSNCGRCTPK--AVKRFLVRNIVEQAAVRDVQEACVNDGYMLPKLYAKMQYCVSCAIHSH
A9NR90________________NGGRNKHGRGHVKFIRCSNCGRCTPKDKAVKRFLVRNIVEQAAVRDVQEACVHDGYMLPKLYAKMQYCVSCAIHSH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain