SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166954

Length: 232 nt

UniGene Fasta

>sp_v3.0_unigene166954
CTTATTACAACTTACCAAGAGATAATATGGGTCGAGTCATTTTAGCGCAGCGTAAAGGCAAATCTGCCATTTTTCGCGCTCGTACTTTCCATCGAAAAGGTGCAGCAAAATTAAGATCTTTGGATTATGCTGAACGACAGGGTTACCTTCGTGGTGTCGTTAAAGATATTATTCATGATCCAGGCCGTGGTGCTCCACTTGCTGTCGTACACTTCCGTGATCCATATCGTTA

Ace file of the UniGene sp_v3.0_unigene166954

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L8 [Triatoma infestans]	-	-	4.0e-25	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	60S ribosomal protein L2	-	-	1.571e-07	-

Source	Gene names
Sma3	At3g51190; At4g36130; CHLREDRAFT_172406; EMB2296; F23E13.20; F24M12.230; GSVIVT00026101001; GSVIVT00026112001; GSVIVT00027466001; GSVIVT00036802001; LOC_Os12g38000; MICPUCDRAFT_49650; MICPUN_95460; MtrDRAFT_AC159144g11v2; OSTLU_31116; Os12g0567700; OsI_38

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L2	IPR002171	-	-
Sma3	Ribosomal protein S19/S15	IPR002222	-	-
Sma3	Ribosomal protein S19A/S15e	IPR005713	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Translation protein SH3-like, subgroup	IPR014722	-	-
Sma3	RNA polymerase Rpb2, OB-fold	IPR014724	-	-
Sma3	Ribosomal protein L2, domain 3	IPR014726	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G36130.1	Ribosomal protein L2 family chr4:17097613-17098656 FORWARD LENGTH=258	4.0e-27	69%
RefSeq	Arabidopsis thaliana	NP_195336.1	60S ribosomal protein L8-3 [Arabidopsis thaliana]	5.0e-27	69%
RefSeq	Populus trichocarpa	XP_002327761.1	predicted protein [Populus trichocarpa]	9.0e-27	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT38

Fln msg: Distance to subject end: 192 aas, your sequence is shorter than subject: 68 - 261

Fln protein: MGRVILAQRKGKSAIFRARTFHRKGAAKLRSLDYAERQGYLRGVVKDIIHDPGRGAPLAVVHFRDPYR

Protein Length: 69

Fln nts: CTTATTACAACTTACCAAGAGATAAT_-_ATGGGTCGAGTCATTTTAGCGCAGCGTAAAGGCAAATCTGCCATTTTTCGCGCTCGTACTTTCCATCGAAAAGGTGCAGCAAAATTAAGATCTTTGGATTATGCTGAACGACAGGGTTACCTTCGTGGTGTCGTTAAAGATATTATTCATGATCCAGGCCGTGGTGCTCCACTTGCTGTCGTACACTTCCGTGATCCATATCGTTA

Fln Alignment:

HLKU4M003FISSP___MGRVILAQRKGKSAIFRARTFHRKGAAKLRSLDYAERQGYLRGVVKDIIHDPGRGAPLAVVHFRDPYR
C0PT38________________MGRVIRAQRKGAGSVFRSHTHHRKGPARFRSLDYGERNGYIKGIVSDVIHDPGRGAPLCKVTFRHPFR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain