SustainPineDB

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Assembly info
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166931

Length: 309 nt

UniGene Fasta

>sp_v3.0_unigene166931
CGTACGAACCTAATACTCAAATTTATTCGTGCGAATTCTGAATTCTGGAACCGAAGATTTCTGGGCAAACATATACCTACTGTACCCTAAGAATTTTCAACTGATAAGCTCTATCCTTGACATGTCGATTGCACTGGCCTAACCTCAGTCAACATTCACGTACACTGAAAGGGATGTGGCACTTTATGCACTTGGTGTTGGTGCATGCGGGGCTGATGCTGTTGATGAGAAAGAATTGAAATATGTTTACCATCAAGATGGGCAATCCTGTATTGAGGTGCTACCCACTTTTGCTGTTTTGTTTCCATA

Ace file of the UniGene sp_v3.0_unigene166931

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	enoyl-CoA hydratase 2 [Arabidopsis thaliana] sp\|Q8VYI3.1\|ECH2_ARATH RecName: Full=Enoyl-CoA hydratase 2, peroxisomal gb\|AAL50100.1\| At1g76150/T23E18_38 [Arabidopsis thaliana] gb\|AAM10336.1\| At1g76150/T23E18_38 [Arabidopsis thaliana] gb\|AEE35803.1\| enoyl-C	-	-	4.0e-16	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%

Source	Gene names
Sma3	At1g76150; GSVIVT00015537001; Os09g0544900; OsI_19089; OsJ_17734; PHYPADRAFT_126709; POPTRDRAFT_652170; RCOM_1600000; VITISV_013561;

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	3R-hydroxyacyl-CoA dehydratase activity	GO:0080023	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	fatty acid beta-oxidation, unsaturated, even number	GO:0033542	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	MaoC-like dehydratase	IPR002539	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G76150.1	ECH2, ATECH2 enoyl-CoA hydratase 2 chr1:28575236-28577637 REVERSE LENGTH=309	2.0e-21	62%
RefSeq	Arabidopsis thaliana	NP_177742.2	enoyl-CoA hydratase 2 [Arabidopsis thaliana]	2.0e-21	62%
RefSeq	Populus trichocarpa	XP_002307764.1	predicted protein [Populus trichocarpa]	1.0e-22	64%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKQ8

Fln msg: Distance to subject end: 236 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 55 - 311

Fln protein: PQSTFTYTERDVALYALGVGACGADAVDEKELKYVYHQDGQSCIEVLPTFAVLFP

Protein Length: 56

Fln nts: CGTACGAACCTAATACTCAAATTTATTCGTGCGAATTCTGAATTCTGGAACCGAAGATTTCTGGGCAAACATATACCTACTGTACCCTAAGAATTTTCAACTGATAAGCTCTATCCTTGACATGTCGATTGCACTGGCCTAACCTCAGTCAACATTCACGTACACTGAAAGGGATGTGGCACTTTATGCACTTGGTGTTGGTGCATGCGGGGCTGATGCTGTTGATGAGAAAGAATTGAAATATGTTTACCATCAAGATGGGCAATCCTGTATTGAGGTGCTACCCACTTTTGCTGTTTTGTTTCCATA

Fln Alignment:

HLKU4M003GX7CM___PQSTFTYTERDVALYALGVGACGADAVDEKELKYVYHQDGQSCIEVLPTFAVLFP
B8LKQ8________________PESTFTYTERDVAVYALGVGACGANAVDEKELKYVYHQDGQSCIQALPTFAVLFP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain