SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166863

Length: 448 nt

UniGene Fasta

>sp_v3.0_unigene166863
AAGAATGCAATTGCAATGCTTCAGTTGCCACATAAGTTTGATGCCTGTTTCATGGATGTTCAAATGCCTGAAATGGACGGGTTTGAAGCAACTAGACAAATCCGTAACATGGAAGAAAAGGTGAATAAGCAGATTGAATCTGGGATTATTTCAAAAGAAGCATATGGTAATGTTAGGAAATGGCATGTACCCATATTTGCAATGACAGCTGATGTAATCCAGGCAACTTATGAGGAATGCTTGAGATGTGGAATGGATGGTTATGTGTCAAAGCCCTTTGAAGAAGAAGAACTCTATAGAGCTGTGGCCCAGTTCTGTGAATCTAACCCTTCATCAAAGCCTTAGTTGTTGGATTTGGACTAGATCAGTGGTATATAGATTCTCAAAGGTTGATCATTGTAAATCTACTATAATCTTTTGCAGTATGGAAGATTGGTGATGGCATCAT

Ace file of the UniGene sp_v3.0_unigene166863

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytokinin receptor 1 (Fragment) n=1 Tax=Betula pendula RepID=B8QJH0_BETPN	-	-	2.0e-40	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Sma3	Histidine kinase	-	-	1.234e-31	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histidine kinase.	EC:2.7.13.3	-	1.268e-06	-

Source	Gene names
Sma3	AHK2; AHK3; AHK4; At1g27320; At2g01830; At5g35750; B1455F06.33; CKR1; CRE1; CRE1A; CRE1B; CRE2; CRE3; GSVIVT00002792001; GSVIVT00029130001; GSVIVT00030632001; GSVIVT00032433001; HK1; HK2; HK3; HK3A; HK3B; LOC_Os03g50860; LOC_Os10g21810; OHK2; OHK3; OHK3b;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	osmosensor activity	GO:0005034	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cytokinin receptor activity	GO:0009884	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	cytokinin mediated signaling pathway	GO:0009736	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	regulation of seed germination	GO:0010029	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	regulation of chlorophyll catabolic process	GO:0010271	Biological Process	-
Sma3	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	-
Sma3	regulation of shoot development	GO:0048831	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase-related protein, C-terminal	IPR004358	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-
Sma3	CHASE	IPR006189	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G35750.1	AHK2, HK2 histidine kinase 2 chr5:13911743-13916337 REVERSE LENGTH=1176	1.4013e-45	69%
RefSeq	Arabidopsis thaliana	NP_568532.1	histidine kinase 2 [Arabidopsis thaliana]	1.4013e-45	69%
RefSeq	Populus trichocarpa	XP_002321181.1	histidine kinase cytokinin receptor [Populus trichocarpa]	2.00386e-43	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC19

Fln msg: your sequence is shorter than subject: 115 - 252

Fln protein: KNAIAMLQLPHKFDACFMDVQMPEMDGFEATRQIRNMEEKVNKQIESGIISKEAYGNVRKWHVPIFAMTADVIQATYEECLRCGMDGYVSKPFEEEELYRAVAQFCESNPSSKP*

Protein Length: 116

Fln nts: AAGAATGCAATTGCAATGCTTCAGTTGCCACATAAGTTTGATGCCTGTTTCATGGATGTTCAAATGCCTGAAATGGACGGGTTTGAAGCAACTAGACAAATCCGTAACATGGAAGAAAAGGTGAATAAGCAGATTGAATCTGGGATTATTTCAAAAGAAGCATATGGTAATGTTAGGAAATGGCATGTACCCATATTTGCAATGACAGCTGATGTAATCCAGGCAACTTATGAGGAATGCTTGAGATGTGGAATGGATGGTTATGTGTCAAAGCCCTTTGAAGAAGAAGAACTCTATAGAGCTGTGGCCCAGTTCTGTGAATCTAACCCTTCATCAAAGCCTTAG___TTGTTGGATTTGGACTAGATCAGTGGTATATAGATTCTCAAAGGTTGATCATTGTAAATCTACTATAATCTTTTGCAGTATGGAAGATTGGTGATGGCATCAT

Fln Alignment:

HLKU4M003HFJD9___KNAIAMLQLPHKFDACFMDVQMPEMDGFEATRQIRNMEEKVNKQIESGIISKEAYGNVRKWHVPIFAMTADVIQATYEECLRCGMDGYVSKPFEEEELYRAVAQF
D5AC19________________KVAVDYFKQGRTYDLVLMDKEMPVMDGHEATRQLRSMGVK----------------------TPIVALTGNTLQSDKDLFFEAGVDDFQTKPLSKDRLVQLLARY

SSRs (tot: 1)

Start position	End position	Sequence	Length
280	291	GAA GAA GAA GAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain