SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166855

Length: 399 nt

UniGene Fasta

>sp_v3.0_unigene166855
ATAAAGCACCGTTATAACAACCCTCCCATATACATCACTGAGACTGGATATGCTGATTTGACAATGGTACAACCCCGCTTGAACGAGCATTGAACGATTCTGGGCGAGTGAAGTACCATTTTCGCCATTTATCTTACTTAATTCAAGCCATTAGGGAGGGTGCGGACGTGCGAGGATACCTGGTTTGGTCGTTTCTGGACAATTTCGAGTGGGCGAGTGGATACAATTATCGATTTGGTTTATTCTATGTGGATTACAGACACGGTTTAAGACGACATCCCAGGGCATCTGCAAAATGGTTTCGAAACATCCTTAAAGATAATTCATGGTTTGTTTCGCGGCAGGGAACGTTGGTGGCCAGAACTAATAACCCCTGATTTTTCATAATTCAGGAGTTGG

Ace file of the UniGene sp_v3.0_unigene166855

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9RI70_RICCO	-	-	3.0e-27	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Beta-glucosidase	-	-	4.914e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	Prunasin beta-glucosidase.	EC:3.2.1.118	-	2.65e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cyanoamino acid metabolism	00460		2.65e-12	%
Sma3	Beta-glucosidase.	EC:3.2.1.21	-	1.368e-21	-

Source	KEGGs	Term	e value	Identity
Sma3	Cyanoamino acid metabolism	00460	1.368e-21	%
Sma3	Starch and sucrose metabolism	00500	1.368e-21	%
Sma3	Phenylpropanoid biosynthesis	00940	1.368e-21	%
Sma3	Biosynthesis of secondary metabolites	01110	1.368e-21	%

Source	Gene names
Sma3	At1g26560; At2g44460; At2g44480; At3g60140; At5g24540; At5g36890; At5g44640; GSVIVT00003779001; GSVIVT00003781001; GSVIVT00003782001; GSVIVT00003784001; GSVIVT00003792001; GSVIVT00003795001; GSVIVT00004181001; GSVIVT00012141001; GSVIVT00024683001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	beta-glucosidase activity	GO:0008422	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	prunasin beta-glucosidase activity	GO:0050224	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellulose catabolic process	GO:0030245	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 1, beta-glucosidase	IPR017736	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G24540.1	BGLU31 beta glucosidase 31 chr5:8384876-8388027 REVERSE LENGTH=534	5.0e-28	53%
RefSeq	Arabidopsis thaliana	NP_197842.1	beta glucosidase 31 [Arabidopsis thaliana]	7.0e-28	53%
RefSeq	Populus trichocarpa	XP_002330881.1	predicted protein [Populus trichocarpa]	3.0e-28	51%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ52

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 125 - 407

Fln protein: KAPL*QPSHIHH*DWIC*FDNGTTPLERALNDSGRVKYHFRHLSYLIQAIREGADVRGYLVWSFLDNFEWASGYNYRFGLFYVDYRHGLRRHPRASAKWFRNILKDNSWFVSRQGTLVARTNNP*

Protein Length: 126

Fln nts: ATAAAGCACCGTTATAACAACCCTCCCATATACATCACTGAGACTGGATATGCTGATTTGACAATGGTACAACCCCGCTTGAACGAGCATTGAACGATTCTGGGCGAGTGAAGTACCATTTTCGCCATTTATCTTACTTAATTCAAGCCATTAGGGAGGGTGCGGACGTGCGAGGATACCTGGTTTGGTCGTTTCTGGACAATTTCGAGTGGGCGAGTGGATACAATTATCGATTTGGTTTATTCTATGTGGATTACAGACACGGTTTAAGACGACATCCCAGGGCATCTGCAAAATGGTTTCGAAACATCCTTAAAGATAATTCATGGTTTGTTTCGCGGCAGGGAACGTTGGTGGCCAGAACTAATAACCCCTGA___TTTTTCATAATTCAGGAGTTGG

Fln Alignment:

HLKU4M003GX5D4___FDNGTTPLERALNDSGRVKYHFRHLSYLIQAIREGADVRGYLVWSFLDNFEWASGYNYRFGLFYVDYRHGLRRHPRASAKWFRNILK
B8LQ52________________FDNGTTPLEQALNDSKRVKYHSEHLSYLLKAIREGADVRGYLVWSLLDSFEWSSGYNYRFGLYHVDYKDNLKRHPKTSAHWFKHILQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain