SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166823

Length: 335 nt

UniGene Fasta

>sp_v3.0_unigene166823
AGCAGAATCTTATTGATGCATATTCAGGGGAGGGCTGGAAAGGCCAGAGTCGGGAGAAAATAAAGCCAGAGAAGGAGTTACAGAGAGCTGAAAAGCAGATTCTGCAATGCAAACTTGGAATTCGTGAAGCAGTGCATCAGCTTGATCTTCTAAGTTCGGAAGGATCTATTGCAGATGCCGTTATTGATCCAGAAGGACGTGTATTTCATGAACATATATTTTGTGCAAAATGCAAAATGACAGATGCTCTTCCGGATAATGACATAATATTGTGTGATGGAGCTTGCAATCGTGGCTTCCATCAGAAATGTCTGGATCCACCTTTGGCTACTGAA

Ace file of the UniGene sp_v3.0_unigene166823

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pathogenesis-related homeodomain protein [Arabidopsis thaliana] sp\|P48785.1\|PRH_ARATH RecName: Full=Pathogenesis-related homeodomain protein; Short=PRHA gb\|AAA32843.1\| homeodomain protein [Arabidopsis thaliana] gb\|AAC49836.1\| PRHA [Arabidopsis thaliana] e	-	-	5.99756e-43	70%
FL-Next	sp=Pathogenesis-related homeodomain protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Sma3	Pathogenesis-related homeodomain protein	-	-	2.217e-08	-

Source	Gene names
Sma3	At3g19510; At4g29940; F27B13.180; GSVIVT00007716001; GSVIVT00009253001; HAT3.1; HAZ1; HOX1A; Hox1a; Hox1b; Hox2a; Hox2b; MLD14.25; MLD14.37; Os02g0147800; Os06g0229300; OsI_05848; OsI_22252; OsJ_05372; OsJ_27188; P0479D12.6; P0525F01.18; PHYPADRAFT_170895

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3		GO:0045941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HMG-I/HMG-Y, DNA-binding, conserved site	IPR000637	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3		IPR012287	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G29940.1	PRHA pathogenesis related homeodomain protein A chr4:14648346-14652710 REVERSE LENGTH=796	70%
RefSeq	Arabidopsis thaliana	NP_001190867.1	Pathogenesis-related homeodomain protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002325264.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P48785

Fln msg: Distance to subject end: 566 aas, your sequence is shorter than subject: 111 - 796

Fln protein: QNLIDAYSGEGWKGQSREKIKPEKELQRAEKQILQCKLGIREAVHQLDLLSSEGSIADAVIDPEGRVFHEHIFCAKCKMTDALPDNDIILCDGACNRGFHQKCLDPPLATE

Protein Length: 112

Fln nts: AGCAGAATCTTATTGATGCATATTCAGGGGAGGGCTGGAAAGGCCAGAGTCGGGAGAAAATAAAGCCAGAGAAGGAGTTACAGAGAGCTGAAAAGCAGATTCTGCAATGCAAACTTGGAATTCGTGAAGCAGTGCATCAGCTTGATCTTCTAAGTTCGGAAGGATCTATTGCAGATGCCGTTATTGATCCAGAAGGACGTGTATTTCATGAACATATATTTTGTGCAAAATGCAAAATGACAGATGCTCTTCCGGATAATGACATAATATTGTGTGATGGAGCTTGCAATCGTGGCTTCCATCAGAAATGTCTGGATCCACCTTTGGCTACTGAA

Fln Alignment:

HLKU4M003FVNDE___QNLIDAYSGEGWKGQSREKIKPEKELQRAEKQILQCKLGIREAVHQLDLLSSEGSIADAVIDPEGRVFHEHIFCAKCKMTDALPDNDIILCDGACNRGFHQKCLDPPLATE
P48785________________QNLIDAYATEGWKGQSREKIRPDKELERARKEILNCKLGLRDAIRQLDLLSSVGSMEEKVIASDGSIHHDHIFCAECNSREAFPDNDIILCDGTCNRAFHQKCLDPPLETE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain