SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166785

Length: 181 nt

UniGene Fasta

>sp_v3.0_unigene166785
CCAACACCAGCTCAGCTACTAACCACCAGCCAACTTCAAACACACAATGGGTCACGCAGCCGGTCTCCGCGCGGGTACGCGCTATGCTTTCTCTAGGGACTTCAAGAAAAAGGGAATGATCCCGCTCTCGACCTACCTCAAGCAGTACAAGGTCGGTGATATCGTCGATGTCGTAGCCAAC

Ace file of the UniGene sp_v3.0_unigene166785

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L21-A n=4 Tax=Pleosporineae RepID=B2WBU9_PYRTR	-	-	5.0e-18	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G57860.1	Translation protein SH3-like family protein chr1:21430034-21430827 REVERSE LENGTH=164	3.0e-11	63%
RefSeq	Arabidopsis thaliana	NP_564726.1	60S ribosomal protein L21-2 [Arabidopsis thaliana]	4.0e-11	63%
RefSeq	Populus trichocarpa	XP_002297896.1	predicted protein [Populus trichocarpa]	3.0e-11	63%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLM4

Fln msg: Distance to subject end: 120 aas, your sequence is shorter than subject: 45 - 165

Fln protein: MGHAAGLRAGTRYAFSRDFKKKGMIPLSTYLKQYKVGDIVDVVAN

Protein Length: 46

Fln nts: CCAACACCAGCTCAGCTACTAACCACCAGCCAACTTCAAACACACA_-_ATGGGTCACGCAGCCGGTCTCCGCGCGGGTACGCGCTATGCTTTCTCTAGGGACTTCAAGAAAAAGGGAATGATCCCGCTCTCGACCTACCTCAAGCAGTACAAGGTCGGTGATATCGTCGATGTCGTAGCCAAC

Fln Alignment:

HLKU4M003FVP0S___GHAAGLRAGTRYAFSRDFKKKGMIPLSTYLKQYKVGDIVDVVAN
A9NLM4________________GH--GVRARTRDLFARPFRKKGYAPLSTYLRSYKIGQYVDIKVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain