SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166749

Length: 263 nt

UniGene Fasta

>sp_v3.0_unigene166749
AAGTCGGACCCTCTGTTGAAGAGACCAGAGAGCTCGCTCATGGACTAGAAGCTGCACAGAAGCCATTCATTTGGGTTTTACAGGATCACTACCATGGTCATCCTCCCCCACCTGATCATCCTCCTTGTGATCATGGTAGTAATGAAGGAGAAGGGGCAGAGGATATGCTTCCCGAGGGTTTCGAAGATCGAAACGAGGGACTGGGTTTGATCATTCGTGGTTGGGCGCCTCAGCTGCTCATACTCTCTCATCCCTCCACTGGA

Ace file of the UniGene sp_v3.0_unigene166749

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glucosyltransferase n=1 Tax=Sinningia cardinalis RepID=D7URL8_9LAMI	-	-	2.0e-12	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	Gene names
Sma3	GSVIVT00038735001; VITISV_017571; VITISV_034975;

Source	GOs	Term	Type	e value	Identity
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G15490.1	UGT73B4 UDP-glycosyltransferase 73B4 chr2:6761750-6763398 FORWARD LENGTH=484	5.0e-14	45%
RefSeq	Arabidopsis thaliana	NP_001189529.1	UDP-glycosyltransferase 73B4 [Arabidopsis thaliana]	4.0e-15	46%
RefSeq	Populus trichocarpa	XP_002313131.1	predicted protein [Populus trichocarpa]	3.0e-15	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVT2

Fln msg: Distance to subject end: 114 aas, your sequence is shorter than subject: 87 - 489

Fln protein: VGPSVEETRELAHGLEAAQKPFIWVLQDHYHGHPPPPDHPPCDHGSNEGEGAEDMLPEGFEDRNEGLGLIIRGWAPQLLILSHPSTG

Protein Length: 88

Fln nts: AAGTCGGACCCTCTGTTGAAGAGACCAGAGAGCTCGCTCATGGACTAGAAGCTGCACAGAAGCCATTCATTTGGGTTTTACAGGATCACTACCATGGTCATCCTCCCCCACCTGATCATCCTCCTTGTGATCATGGTAGTAATGAAGGAGAAGGGGCAGAGGATATGCTTCCCGAGGGTTTCGAAGATCGAAACGAGGGACTGGGTTTGATCATTCGTGGTTGGGCGCCTCAGCTGCTCATACTCTCTCATCCCTCCACTGGA

Fln Alignment:

HLKU4M003GR292___SVEETRELAHGLEAAQKPFIWVLQXXXXXXXXXXXXXXXXXGSNEGEGAED--MLPEGFEDRNEGLGLIIRGWAPQLLILSHPSTG
A9NVT2________________SNKQVEEMAAGLEATEESFIWVIRDPP-----------------SGMPADEYGVLPQGFEDRMEGRGLIIRGWAPQLLILSHPSVG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain