SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166747

Length: 404 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene166747
AGAGGGAGAGGACTATGAAGAGACATTTGCTCCAGTTGCCAAGTACACTTCTATTCGAACAATTATTTCCACTGCTTCTATTATGGGTTGGAAATTGCATCAGGTAGATGTGGAGACTGTTTTCCTCAATGGTGTAATTAAGGAAGAAGAAGTGTACATAGAGCCATCTCAAGGCTTTGACGTACATGCTTTGAGGTACATGAGAATGAGTCTCATGTCTACAGGCTAAAGAAAGCTTTGTATAGACCTCAAACATGGTATTCTTGGATTAATGAATATTTGATGAGACTTGGTTGATCTTGTTATTATATGACTTGTTTCTAATGGACGCAGAAGGATTCACATGACAGAGGGAGCAACAGTGGCAGGAGGATTTGCTTCCGTGATAGAGGGAGCAGTACAAG

Ace file of the UniGene sp_v3.0_unigene166747 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB	-	-	7.0e-21	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Reverse transcriptase	-	-	3.58e-09	-

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Separated hits, possible frame ERROR between 184 and 190, Unexpected STOP codon at 3' end. Distance to subject end: 173 aas, your sequence is shorter than subject: 99 - 363

Fln protein: EGEDYEETFAPVAKYTSIRTIISTASIMGWKLHQVDVETVFLNGVIKEEEVYIEPSQGFDxxxFEVHENESHVYRLKKALYRPQTWYSWINEYLMRLG*

Protein Length: 100

Fln nts: AGAGGGAGAGGACTATGAAGAGACATTTGCTCCAGTTGCCAAGTACACTTCTATTCGAACAATTATTTCCACTGCTTCTATTATGGGTTGGAAATTGCATCAGGTAGATGTGGAGACTGTTTTCCTCAATGGTGTAATTAAGGAAGAAGAAGTGTACATAGAGCCATCTCAAGGCTTTGACGTxxxxxxCTTTGAGGTACATGAGAATGAGTCTCATGTCTACAGGCTAAAGAAAGCTTTGTATAGACCTCAAACATGGTATTCTTGGATTAATGAATATTTGATGAGACTTGGTTGATCTTGTTATTATATGACTTGTTTCTAATGGACGCAGAAGGATTCACATGACAGAGGGAGCAACAGTGGCAGGAGGATTTGCTTCCGTGATAGAGGGAGCAGTACAAG

Fln Alignment:

HLKU4M003G96C3___GEDYEETFAPVAKYXXXXXXXXXXXIMGWKLHQVDVETVFLNGVIKEEEVYIEPSQGFDVxxFEVHENESHVYRLKKAL----YRPQTWYSWINEYLMR
B8LKV8________________GVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYL-EEEVYVQQPPRYEVxxYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain