SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166721

Length: 536 nt

UniGene Fasta

>sp_v3.0_unigene166721
CAGGAAATCGACACGGTCTACTCGTTCCAGCCGGTACTACAGATCAAGAGTTGCAGCATCTACGAAACTCTCTTCCGGATACCGTCGCCCTACAGCGAATCGAGGAACGATTAAGTGCTCTCGGAAATGTAATCGCATGCAACGATCACGTTGCACTGGTACACCCCGACGTGGACAGAGAAACAGAGGAGATTATAGCAGACGTCCTCAAGGTCGAAGTCTTTAGGCAGACGGTGGCAGACAATGTCCTTGTGGGCAGCTATTGTGCGATCAGTAATCAAGGAGGTCTAGTCCATCCCAAGACGAGCTTACAAAGTCAGGAAGAATTGTCAAGTCTACTCCAAGTTCCGCTGGTGGCTGGAACAGTCAATCGAGGATCAGATGTAATAGGTGCAGGACTCGTCGTCAACGATTGGTGTGCATTTACAGGCATGGACACCACCGCGACAGAAATTAGTGTTATTGAAGCAACCTTTAAACTTCAAGGACACGACCAGTCTGCAGTCATTGGACAGATGCGCGACGCTCTGATTGAC

Ace file of the UniGene sp_v3.0_unigene166721

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Eukaryotic translation initiation factor 6 n=3 Tax=Agaricomycetes RepID=A8NUF7_COPC7	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Eukaryotic translation initiation factor 6	-	-	5.099e-24	-

Source	Gene names
Sma3	At2g39820; At3g55620; B1085F09.12; CHLREDRAFT_188065; EIF6; EIF6A; Eif6; F1I16_30; GSVIVT00019318001; MICPUCDRAFT_64933; MICPUN_107364; OJ1340_C08.131; OSJNBa0036E02.14; OSTLU_119613; Os01g0280500; Os07g0639800; OsI_01410; OsI_27044; OsJ_01320; OsJ_25302;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	ribosome binding	GO:0043022	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	integrin-mediated signaling pathway	GO:0007229	Biological Process	-
Sma3	mature ribosome assembly	GO:0042256	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation initiation factor IF6	IPR002769	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G55620.1	emb1624 Translation initiation factor IF6 chr3:20634581-20636312 FORWARD LENGTH=245	71%
RefSeq	Arabidopsis thaliana	NP_191121.1	Translation initiation factor IF6 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002306418.1	predicted protein, partial [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTP3

Fln msg: STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 178 - 245

Fln protein: GNRHGLLVPAGTTDQELQHLRNSLPDTVALQRIEERLSALGNVIACNDHVALVHPDVDRETEEIIADVLKVEVFRQTVADNVLVGSYCAISNQGGLVHPKTSLQSQEELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWCAFTGMDTTATEISVIEATFKLQGHDQSAVIGQMRDALID

Protein Length: 179

Fln nts: CAGGAAATCGACACGGTCTACTCGTTCCAGCCGGTACTACAGATCAAGAGTTGCAGCATCTACGAAACTCTCTTCCGGATACCGTCGCCCTACAGCGAATCGAGGAACGATTAAGTGCTCTCGGAAATGTAATCGCATGCAACGATCACGTTGCACTGGTACACCCCGACGTGGACAGAGAAACAGAGGAGATTATAGCAGACGTCCTCAAGGTCGAAGTCTTTAGGCAGACGGTGGCAGACAATGTCCTTGTGGGCAGCTATTGTGCGATCAGTAATCAAGGAGGTCTAGTCCATCCCAAGACGAGCTTACAAAGTCAGGAAGAATTGTCAAGTCTACTCCAAGTTCCGCTGGTGGCTGGAACAGTCAATCGAGGATCAGATGTAATAGGTGCAGGACTCGTCGTCAACGATTGGTGTGCATTTACAGGCATGGACACCACCGCGACAGAAATTAGTGTTATTGAAGCAACCTTTAAACTTCAAGGACACGACCAGTCTGCAGTCATTGGACAGATGCGCGACGCTCTGATTGAC

Fln Alignment:

HLKU4M003GFTID___GNRHGLLVPAGTTDQELQHLRNSLPDTVALQRIEERLSALGNVIACNDHVALVHPDVDRETEEIIADVLKVEVFRQTVADNVLVGSYCAISNQGGLVHPKTXXXXXXXXXXXXXVPLVAGTVNRGSDVIGAGLVVNDWCAFTGMDTTATEISVIEATFKLQGHDQSAVIGQMRDALID
A9NTP3________________GNKNGPLLPNTTTDQELQHLRNSLPDKVVVQRVEERLSALGNCVVCNDHVALIHTDLDRETEELIADVLGVEVFRQTIAGNILVGSYCVLSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGMIVNDWTAFCGLDTTATELSVVESVFKLRESQPSAIVDEMRKSLID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain