SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166713

Length: 228 nt

UniGene Fasta

>sp_v3.0_unigene166713
GGAACCCCCGAGACACCACAATGCGGATTCTCGAGGGCAAGCATACAGATTCTGGGCATGCAGGGTGTGGACCCGGACAAGTTCACAGCATTTCAATGTGCTCGAGGACCAGGAATTGAGGGCAGGAATCAAAGAATACTCGGAGTGGCCCACGATACCCCAGCTTTACGTCGACAAAGAGTTCATCGGTGGCTGTGACATCCTCATGACTATGCATCAGGATGGGAC

Ace file of the UniGene sp_v3.0_unigene166713

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Monothiol glutaredoxin-5, mitochondrial n=2 Tax=Pyrenophora RepID=B2W130_PYRTR	-	-	3.0e-32	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	Gene names
Sma3	CHLREDRAFT_195767; GRX5; Grx; PHYPADRAFT_110910; PHYPADRAFT_113360; PHYPADRAFT_144163; POPTRDRAFT_675640;

Source	GOs	Term	Type	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Monothiol glutaredoxin-related	IPR004480	-	-
Sma3		IPR012335	-	-
Sma3	Monothiol glutaredoxin	IPR014434	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G15660.1	ATGRX4, GRX4 glutaredoxin 4 chr3:5308134-5309383 REVERSE LENGTH=169	1.0e-14	54%
RefSeq	Arabidopsis thaliana	NP_566522.1	monothiol glutaredoxin-S15 [Arabidopsis thaliana]	1.0e-14	54%
RefSeq	Populus trichocarpa	XP_002303260.1	glutaredoxin S15 [Populus trichocarpa]	4.0e-14	59%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLE0

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 75 - 192

Fln protein: EPPRHHNADSRGQAYRFWACRVWTRTSSQHFNVLEDQELRAGIKEYSEWPTIPQLYVDKEFIGGCDILMTMHQDG

Protein Length: 76

Fln nts: GGAACCCCCGAGACACCACAATGCGGATTCTCGAGGGCAAGCATACAGATTCTGGGCATGCAGGGTGTGGACCCGGACAAGTTCACAGCATTTCAATGTGCTCGAGGACCAGGAATTGAGGGCAGGAATCAAAGAATACTCGGAGTGGCCCACGATACCCCAGCTTTACGTCGACAAAGAGTTCATCGGTGGCTGTGACATCCTCATGACTATGCATCAGGATGGGAC

Fln Alignment:

HLKU4M003F6ODK___FNVLEDQELRAGIKEYSEWPTIPQLYVDKEFIGGCDILMTMHQDG
A9NLE0________________FNILENETLRQGLKQYSSWPTFPQLYIDGEFFGGCDITIEAYKSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain