SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166583

Length: 361 nt

UniGene Fasta

>sp_v3.0_unigene166583
AGAGTTTACATCCGGAAGATTGTTGAAGGTCTTGGAGATGAGGACAAAATGCAGATAACAGAGCAAGTTCTCTTGGCCATCCAGATTACAGGTGACTGGGAGTCAGTCCATCCACGGGTTTGTTGGCATTCTCATATTCAGGAGATATTGCTAGTTGGAGTGGGAAAGTATGTACTGAAAATTGATGTTACAAAAGCAAGATATGCTGCACGCAGTGGTGGTACTTCGTATGAAGAACCCATTAAGTTTCATGTTGAGAACCCAATTGAAGGAGTCTATTGCATGGGGAAACACAATGGAGAGGTCACAGATTTGTCTATAAATCAGTGGCTCGCAACTCGTCTGGCCTCATCATCAAAGG

Ace file of the UniGene sp_v3.0_unigene166583

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0722800 protein n=2 Tax=Oryza sativa RepID=Q6Z5M6_ORYSJ	-	-	2.0e-31	56%
FL-Next	sp=Varicose-related protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	49%

Source	Gene names
Sma3	At3g13300; GSVIVT00011841001; GSVIVT00033471001; MtrDRAFT_AC161399g55v2; Os02g0722800; Os06g0300800; OsI_08745; OsI_22653; OsJ_21072; P0501G08.38-1; P0501G08.38-2; P0654B04.36; P0685G12.5; PHYPADRAFT_193513; PHYPADRAFT_216156; POPTRDRAFT_270075; POPTRDRAF

Source	GOs	Term	Type	Identity
Sma3	cytoplasmic mRNA processing body	GO:0000932	Cellular Component	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	deadenylation-independent decapping of nuclear-transcribed mRNA	GO:0031087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G13290.1	VCR varicose-related chr3:4297529-4303113 FORWARD LENGTH=1340	2.0e-32	49%
RefSeq	Arabidopsis thaliana	NP_187937.2	varicose-related protein [Arabidopsis thaliana]	2.0e-32	49%
RefSeq	Populus trichocarpa	XP_002329940.1	predicted protein [Populus trichocarpa]	2.0e-34	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LTT9

Fln msg: Distance to subject end: 979 aas, your sequence is shorter than subject: 120 - 1340

Fln protein: RVYIRKIVEGLGDEDKMQITEQVLLAIQITGDWESVHPRVCWHSHIQEILLVGVGKYVLKIDVTKARYAARSGGTSYEEPIKFHVENPIEGVYCMGKHNGEVTDLSINQWLATRLASSSK

Protein Length: 121

Fln nts: AGAGTTTACATCCGGAAGATTGTTGAAGGTCTTGGAGATGAGGACAAAATGCAGATAACAGAGCAAGTTCTCTTGGCCATCCAGATTACAGGTGACTGGGAGTCAGTCCATCCACGGGTTTGTTGGCATTCTCATATTCAGGAGATATTGCTAGTTGGAGTGGGAAAGTATGTACTGAAAATTGATGTTACAAAAGCAAGATATGCTGCACGCAGTGGTGGTACTTCGTATGAAGAACCCATTAAGTTTCATGTTGAGAACCCAATTGAAGGAGTCTATTGCATGGGGAAACACAATGGAGAGGTCACAGATTTGTCTATAAATCAGTGGCTCGCAACTCGTCTGGCCTCATCATCAAAGG

Fln Alignment:

HLKU4M003HCCYU___RVYIRKIVEGLGDEDKMQITEQVLLAIQITGDWESVHPRVCWHSHIQEILLVGVGKYVLKIDVTKARYAARSGGTSYEEPIKFHVENPIEGVYCMGKHNGEVTDLSINQWLATRLASSS
Q9LTT9________________KVFVWKISEGSEGDEQSQITGKIVVALQILGEEDTKHPRVCWHCHKQEILVVSIGKHVLRIDTTK---VGRGEVFSAEAPLQCHLDKLIDGVQIVGKHDGEVTDLSMCQWMTTRLVSSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain