SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166556

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene166556
AATGTAGGAGTTGGGGATCGTGGGTTTCTGAGATAAGGGCACCCCATCAGAAGACGAGGATCTGGTTGGGCTCATATCCTACAGCAGAAGCCGCTGCCAGAGCTTATGATGCAGCTGTACTCTGTCTCAAGGGCTCCTCTGCTCCTCTCAATTTCCCAGAATCTGCCACCATTATTAAACCTCCTCAGAGCTGCCAGCCATCATTGATGTCTCCGAGGTCTAT

Ace file of the UniGene sp_v3.0_unigene166556

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor AP2 n=1 Tax=Taxus cuspidata RepID=B2CSN5_TAXCU	-	-	3.0e-15	61%
FL-Next	tr=Transcription factor AP2; Taxus cuspidata (Japanese yew).	-	-	0.0	76%
Sma3	AP2/ERF domain-containing transcription factor	-	-	0.0	-

Source	Gene names
Sma3	AP22.2; At1g01250; At1g19210; At1g21910; At1g33760; At1g43160; At1g44830; At1g74930; At1g77200; At1g77640; At2g23340; At2g25820; At2g35700; At2g44940; At3g16280; At3g50260; At3g60490; At4g06746; At4g16750; At4g32800; At4g36900; At5g11590; At5g25810; At5g5

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	YbaK/aminoacyl-tRNA synthetase-associated domain	IPR007214	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G44830.1	Integrase-type DNA-binding superfamily protein chr1:16933792-16934427 FORWARD LENGTH=211	6.0e-18	87%
RefSeq	Arabidopsis thaliana	NP_175104.1	ethylene-responsive transcription factor ERF014 [Arabidopsis thaliana]	7.0e-18	87%
RefSeq	Populus trichocarpa	XP_002337051.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	3.0e-19	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B2CSN5

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 73 - 268

Fln protein: CRSWGSWVSEIRAPHQKTRIWLGSYPTAEAAARAYDAAVLCLKGSSAPLNFPESATIIKPPQSCQPSLMSPRS

Protein Length: 74

Fln nts: AATGTAGGAGTTGGGGATCGTGGGTTTCTGAGATAAGGGCACCCCATCAGAAGACGAGGATCTGGTTGGGCTCATATCCTACAGCAGAAGCCGCTGCCAGAGCTTATGATGCAGCTGTACTCTGTCTCAAGGGCTCCTCTGCTCCTCTCAATTTCCCAGAATCTGCCACCATTATTAAACCTCCTCAGAGCTGCCAGCCATCATTGATGTCTCCGAGGTCTAT

Fln Alignment:

HLKU4M003FS8QE___RSWGSWVSEIRAPHQKTRIWLGSYPTXXXXXXXXXXXVLCLKGSSAPLNFPESATIIKPPQSCQPSLMSPRS
B2CSN5________________RSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSAALNFPDSAIALDK----EPVGMSPRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain