SustainPineDB

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Assembly info
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SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166492

Length: 150 nt

UniGene Fasta

>sp_v3.0_unigene166492
TGGGCAACTCTGATGATGGTTCTGAGATCCACGACGTTGAGGTAATCCATTCATGGTCATTACCAAGGTCTCTGAGCACCAGTCTCATGTACGCATTTGCACAGAGGGACGATACAGAAGTGATTGATGAACCTCTATATGCACATTTTG

Ace file of the UniGene sp_v3.0_unigene166492

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Branched-chain amino acid aminotransferase-like protein n=1 Tax=Cicer arietinum RepID=Q84L60_CICAR	-	-	2.0e-11	82%
FL-Next	sp=Branched-chain-amino-acid aminotransferase-like protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	86%

Source	Gene names
Sma3	At3g05190; At5g27410; F21A20_120; GSVIVT00022872001; LOC_Os03g24460; OsI_11647; OsJ_10916; PHYPADRAFT_130368; PHYPADRAFT_141539; POPTRDRAFT_595547; RCOM_2072330; T12H1.16; aat;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	branched-chain-amino-acid transaminase activity	GO:0004084	Molecular Function	-
Sma3	transaminase activity	GO:0008483	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	branched chain family amino acid metabolic process	GO:0009081	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class IV	IPR001544	-	-
Sma3	Branched-chain amino acid aminotransferase I	IPR005785	-	-
Sma3	Aminotransferase, class IV, conserved site	IPR018300	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G05190.1	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein chr3:1471457-1475067 FORWARD LENGTH=555	4.0e-15	86%
RefSeq	Arabidopsis thaliana	NP_187170.2	branched-chain-amino-acid aminotransferase-like protein 1 [Arabidopsis thaliana]	5.0e-15	86%
RefSeq	Populus trichocarpa	XP_002328541.1	predicted protein [Populus trichocarpa]	4.0e-16	84%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q8W0Z7

Fln msg: Distance to subject end: 514 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 49 - 555

Fln protein: GNSDDGSEIHDVEVIHSWSLPRSLSTSLMYAFAQRDDTEVIDEPLYAHF

Protein Length: 50

Fln nts: TGGGCAACTCTGATGATGGTTCTGAGATCCACGACGTTGAGGTAATCCATTCATGGTCATTACCAAGGTCTCTGAGCACCAGTCTCATGTACGCATTTGCACAGAGGGACGATACAGAAGTGATTGATGAACCTCTATATGCACATTTTG

Fln Alignment:

HLKU4M003GKPCA___EVIHSWSLPRSLSTSLMYAFAQRDDTEVIDEPLYAHF
Q8W0Z7________________EVIHSWSAPRSLSTSLMYSFAQRLDTEVVDEPLYASF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain