SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166419

Length: 440 nt

UniGene Fasta

>sp_v3.0_unigene166419
AATGTGTAAACTACTTTTCCGCTGTAAGAGCTCGTAAGAGTGGGGTGAAAAGGTTAAAAATTGGTCTTCCCTTCCCACAATCCTTGGCCATAGGTTGAAAAATTGCTCTGCTCTTCTCAGAATCCTAACTAATCTACTTCTCTGCAACTTTTATTCTCAACCCTATTTCTAATTACATTTACTGATGGCTGCCTCCACCTCCACGGCTGTTAAACAAACCAGCAATTACTACTATTACGATGTGTTTATTAACCATCGTGGACCCGATACTAAGAGGACTTTCGCGAGCCATCTGTACCGTCGTCTTCTCTCACATGGACTTAGAGCTTTTTTGGACCAGTCGGAATTGCAACCAGGAGACTACTTCATTTCTCAAATAGAAGGTGCTATCCAAACCGCATCAGTACATGTGGCCATTTTTTCACCGAGGTATGCAGAAT

Ace file of the UniGene sp_v3.0_unigene166419

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	1.0e-23	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Putative TIR/NBS/LRR disease resistance protein	-	-	5.455e-09	-

Source	Gene names
Sma3	OJ1092_A07.109; OJ1773_H01.131; Os07g0566800; OsI_26515; OsJ_24778; PHYPADRAFT_30880;

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G52900.1	Toll-Interleukin-Resistance (TIR) domain family protein chr1:19702211-19702916 REVERSE LENGTH=199	1.0e-16	45%
RefSeq	Arabidopsis thaliana	NP_175698.1	Toll-Interleukin-Resistance domain-containing protein [Arabidopsis thaliana]	2.0e-16	45%
RefSeq	Populus trichocarpa	XP_002316915.1	predicted protein, partial [Populus trichocarpa]	2.0e-15	52%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ96

Fln msg: Distance to subject end: 81 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 85 - 166

Fln protein: MAASTSTAVKQTSNYYYYDVFINHRGPDTKRTFASHLYRRLLSHGLRAFLDQSELQPGDYFISQIEGAIQTASVHVAIFSPRYAE

Protein Length: 86

Fln nts: AATGTGTAAACTACTTTTCCGCTGTAAGAGCTCGTAAGAGTGGGGTGAAAAGGTTAAAAATTGGTCTTCCCTTCCCACAATCCTTGGCCATAGGTTGAAAAATTGCTCTGCTCTTCTCAGAATCCTAACTAATCTACTTCTCTGCAACTTTTATTCTCAACCCTATTTCTAATTACATTTACTG_-_ATGGCTGCCTCCACCTCCACGGCTGTTAAACAAACCAGCAATTACTACTATTACGATGTGTTTATTAACCATCGTGGACCCGATACTAAGAGGACTTTCGCGAGCCATCTGTACCGTCGTCTTCTCTCACATGGACTTAGAGCTTTTTTGGACCAGTCGGAATTGCAACCAGGAGACTACTTCATTTCTCAAATAGAAGGTGCTATCCAAACCGCATCAGTACATGTGGCCATTTTTTCACCGAGGTATGCAGAAT

Fln Alignment:

HLKU4M003GJA5Y___LLMAASTSTAVKQTSNYYYYDVFINHRGPDTKRTFASHLYRRLLSHGLRAFLDQSELQPGDYFISQIEGAIQTASVHVAIFSPRYAE
B8LQ96________________LAMAASSSIAA-----HYSYDVFINHRGPDVKKTFASHLYRDLSKYGLKVFLDDPEMQPGDSLIRQIEGAVGTASVHVAVFSSRYAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain