SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166347

Length: 253 nt

UniGene Fasta

>sp_v3.0_unigene166347
CACTCCAACAATAACATGTCTTGGCAAGCATACGTCGACGATCAACTTATCGGAGCAGGATTCGCCAAGGGAGCTATTCTTGGGCATGATGGAAATACCTGGGCCACCTCAGCAGGCTTCAGCATTACCCCGGCTGAAGGAAAACAACTTGCTGACAACTTCAAGAACCCCTCAGCGGCCCAAAGTAACGGTGTCGCTGCTGCGGGAGTCAAATACTTGACTGTAAAGGCTGATGACGTTTCGATTTACGGCA

Ace file of the UniGene sp_v3.0_unigene166347

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Profilin-2 n=1 Tax=Acanthamoeba castellanii RepID=PROF2_ACACA	-	-	1.0e-20	57%
FL-Next	sp=Profilin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMR7

Fln msg: Distance to subject end: 47 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 79 - 132

Fln protein: MSWQAYVDDQLIGAGFAKGAILGHDGNTWATSAGFSITPAEGKQLADNFKNPSAAQSNGVAAAGVKYLTVKADDVSIYG

Protein Length: 80

Fln nts: CACTCCAACAATAAC_-_ATGTCTTGGCAAGCATACGTCGACGATCAACTTATCGGAGCAGGATTCGCCAAGGGAGCTATTCTTGGGCATGATGGAAATACCTGGGCCACCTCAGCAGGCTTCAGCATTACCCCGGCTGAAGGAAAACAACTTGCTGACAACTTCAAGAACCCCTCAGCGGCCCAAAGTAACGGTGTCGCTGCTGCGGGAGTCAAATACTTGACTGTAAAGGCTGATGACGTTTCGATTTACGGCA

Fln Alignment:

HLKU4M003F1WOF___MSWQAYVDDQLI-----GAGFAKGAILGHDGNTWATSAGF-SITPAEGKQLADNFKNPSAAQSNGVAAAGVKYLTVKAD
A9NMR7________________MSWQTYVDEHLMCDLSNGSRLSSAAIYGHDGTPWAYSESFPQLKPEEAAAIMNDFENPGTLAPTGLFIGGTKYMVIQGE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain