SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166340

Length: 126 nt

UniGene Fasta

>sp_v3.0_unigene166340
GCTGCAGTGATAGTGCTGCCGACTGTTTGGCTGAAAGATTTGCGCATTCTTTCTTATTTCTCAGCTGGTGGAGTGCTTGCAACTGTTTTGGTTATCTTCGCAGTTTTCTGGGTGGGAGCCATAGAT

Ace file of the UniGene sp_v3.0_unigene166340

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transmembrane amino acid transporter family protein [Arabidopsis thaliana] gb\|AEE79297.1\| Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	-	-	8.0e-09	68%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	75%

Source	Gene names
Sma3	At2g41190; OJ1046_F07.2-2; OSJNBa0054K20.28-2; OsI_09226; OsJ_08666;

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54830.1	Transmembrane amino acid transporter family protein chr3:20311901-20315030 REVERSE LENGTH=546	4.0e-13	68%
RefSeq	Arabidopsis thaliana	NP_191043.2	Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	6.0e-13	68%
RefSeq	Populus trichocarpa	XP_002316384.1	amino acid transporter, partial [Populus trichocarpa]	5.0e-13	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1JG57

Fln msg: Distance to subject end: 198 aas, your sequence is shorter than subject: 42 - 513

Fln protein: AAVIVLPTVWLKDLRILSYFSAGGVLATVLVIFAVFWVGAID

Protein Length: 43

Fln nts: GCTGCAGTGATAGTGCTGCCGACTGTTTGGCTGAAAGATTTGCGCATTCTTTCTTATTTCTCAGCTGGTGGAGTGCTTGCAACTGTTTTGGTTATCTTCGCAGTTTTCTGGGTGGGAGCCATAGAT

Fln Alignment:

HLKU4M003GTFOP___AVIVLPTVWLKDLRILSYFSAGGVLATVLVIFAVFWVGAID
I1JG57________________ALIILPTVWLKDLRIISYLSAGGVIATVLIIICVFCVGTID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain