SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166321

Length: 413 nt

UniGene Fasta

>sp_v3.0_unigene166321
AACTATCCCGCTCTCCGACTTGGATCCGTAATAATTTCACGACTTGACTACCAATGCCTCCCCCACATTATGACTTTCTCATCAAGCTTCTACTTATCGGTGACTCCGGTGTCGGCAAGTCCTGTCTGTTACTGAGGTTCTGCGACGACGCCTGGACCCCTTCATTCATCACCACAATTGGTATCGACTTCAAGATCCGCACCATTGAACTTGACGGAAAACGAATCAAACTCCAAATCTGGGACACTGCCGGTCAGGAACGGTTCCGTACCATTACTGTTGCGTATTACAGGGGCGCCATGGGAATTTTGCTCGTCTACGACGTCACCGACCAGCGATCGTTTGACAACATTCGCACATGGCACTCCAACATCGAGCAGCACGCTTCCGAAGGAGTGAACAAGATCCTAATT

Ace file of the UniGene sp_v3.0_unigene166321

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rab-type small GTP-binding protein n=3 Tax=Agaricomycetidae RepID=Q4G2I9_PAXIN	-	-	0.0	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Small GTP-binding protein	-	-	4.758e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sphingomyelin phosphodiesterase.	EC:3.1.4.12	-	1.824e-10	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Sphingolipid metabolism	00600		1.824e-10	%
Sma3	Metabolic pathways	01100		1.824e-10	%

Source	Gene names
Sma3	24.t00078; 26.t00059; 27.t00047; 40.t00023; ARA-3; ARA-5; AT4g17170; AT4g17530; AT4g35860; AT5g47200/MQL5_5; ATFP8; At1g02130; At1g09630; At3g09900; At3g11730; At3g46060; At3g53610; At4g17170; At4g17530; At4g35860; At5g03520; At5g47200; At5g47201; At5g598

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	endosome	GO:0005768	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	endoplasmic reticulum-Golgi intermediate compartment membrane	GO:0033116	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	transcription factor binding	GO:0008134	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major sperm protein	IPR000535	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3		IPR003577	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	PapD-like	IPR008962	-	-
Sma3		IPR013753	-	-
Sma3		IPR015595	-	-
Sma3		IPR015598	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G03520.1	ATRAB8C, ATRABE1D, ATRAB-E1D, RAB-E1D, RAB8C RAB GTPase homolog 8C chr5:883679-885158 FORWARD LENGTH=216	86%
RefSeq	Arabidopsis thaliana	NP_195972.1	RAB GTPase-8C [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002313450.1	predicted protein [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPM3

Fln msg: Distance to subject end: 90 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 120 - 216

Fln protein: MPPPHYDFLIKLLLIGDSGVGKSCLLLRFCDDAWTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITVAYYRGAMGILLVYDVTDQRSFDNIRTWHSNIEQHASEGVNKILI

Protein Length: 121

Fln nts: AACTATCCCGCTCTCCGACTTGGATCCGTAATAATTTCACGACTTGACTACCA_-_ATGCCTCCCCCACATTATGACTTTCTCATCAAGCTTCTACTTATCGGTGACTCCGGTGTCGGCAAGTCCTGTCTGTTACTGAGGTTCTGCGACGACGCCTGGACCCCTTCATTCATCACCACAATTGGTATCGACTTCAAGATCCGCACCATTGAACTTGACGGAAAACGAATCAAACTCCAAATCTGGGACACTGCCGGTCAGGAACGGTTCCGTACCATTACTGTTGCGTATTACAGGGGCGCCATGGGAATTTTGCTCGTCTACGACGTCACCGACCAGCGATCGTTTGACAACATTCGCACATGGCACTCCAACATCGAGCAGCACGCTTCCGAAGGAGTGAACAAGATCCTAATT

Fln Alignment:

HLKU4M003GV13J___YDFLIKLLLIGDSGVGKSCLLLRFCDDAWTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITVAYYRGAMGILLVYDVTDQRSFDNIRTWHSNIEQHASEGVNKILI
C0PPM3________________YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain