SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166263

Length: 296 nt

UniGene Fasta

>sp_v3.0_unigene166263
CGTGCCAAGCAGATCCGCCTGGGAAACATTCTGGAGCTTGTAGATGACCGCCTTGGGAAGGACATTGATGTAGAAGAGGTTAGGAGAACAGCAATGGTAGCTATCTGGTGCATTCAGGATGGTGAGGGTTCAAGGCCAAGAATGGGCACGATTGTAAAGATGCTAGAAGGAGTTGTGGATGTTTTGACTCCCCCAATACCAAGAACTCTACAAGCCCTCATGGACGAAAATGCTGAGACGCAAGTGATGACCATGGATTCTGATTCATCATCTCTTGTTTCTTCTCCTTCTATCAC

Ace file of the UniGene sp_v3.0_unigene166263

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2; AltName: Full=Receptor-like kinase 4; AltName: Full=S-domain-2 (SD2) receptor kinase 2; Short=SD2-2; Flags: Precursor gb\|AAA32858.1\| receptor-like protein kinase [Arabidops	-	-	4.0e-16	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%

Source	Gene names
Sma3	AT4g00340; A_IG005I10.19; F5I10.19; Os01g0223900; OsI_00958; OsJ_00938; P0417G05.23; P0443E05.40; POPTRDRAFT_898169;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	PAN-1 domain	IPR003014	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G00340.1	RLK4 receptor-like protein kinase 4 chr4:148958-151496 FORWARD LENGTH=818	2.0e-20	57%
RefSeq	Arabidopsis thaliana	NP_567172.4	receptor-like protein kinase 4 [Arabidopsis thaliana]	2.0e-20	57%
RefSeq	Populus trichocarpa	XP_002320809.1	predicted protein [Populus trichocarpa]	1.0e-22	59%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 98 - 431

Fln protein: RAKQIRLGNILELVDDRLGKDIDVEEVRRTAMVAIWCIQDGEGSRPRMGTIVKMLEGVVDVLTPPIPRTLQALMDENAETQVMTMDSDSSSLVSSPSI

Protein Length: 99

Fln nts: CGTGCCAAGCAGATCCGCCTGGGAAACATTCTGGAGCTTGTAGATGACCGCCTTGGGAAGGACATTGATGTAGAAGAGGTTAGGAGAACAGCAATGGTAGCTATCTGGTGCATTCAGGATGGTGAGGGTTCAAGGCCAAGAATGGGCACGATTGTAAAGATGCTAGAAGGAGTTGTGGATGTTTTGACTCCCCCAATACCAAGAACTCTACAAGCCCTCATGGACGAAAATGCTGAGACGCAAGTGATGACCATGGATTCTGATTCATCATCTCTTGTTTCTTCTCCTTCTATCAC

Fln Alignment:

HLKU4M003GXNNS___RAKQIRLGNILELVDDRLGKDIDVEEVRRTAMVAIWCIQDGEGSRPRMGTIVKMLEGVVDVLTPPIPRTL
A9NM60________________KARQDKMEEIIE-TGLEMKRPEDLEEAYRLIKTALWCVQSNSGLRPSMGTVVRILEGDLEILDPPSEWTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain