SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166219

Length: 499 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene166219
ACAGTGAGAAGCTAGCCATTGCTTTTGGGCTTATCAATACATCCCTTGAGGCTCCCATTCGGATAATCAAGAATCTCGTGTCTGTGAAGACTGCCACACTGCTACCAAGCTAATTTCCAAAATTGTTGGACGAGAAATTATTGTGAGAGATGCCAACCGTTTCCATCATTTCAAGGATGGATTGTGTTCATGTGGGGATTATTGGTGACCGAAGTCAAAAAACAAAAGAAGAGAAGCTTTACTACAATGTCATGCATATTACTGGCAAGGTCGATACAAATTCAAATCTGATGCTATTCTGCATTTGCAGATGATGCAACATAGGCCTTATGACTGGCAAGGTTGATACAAATTAAAATCTGATACTATTCTGCATTTGCAGATGATGCGACATAGGCCTTATATCACCCTGGAGATCATGGTTTATTGCATCATCAATATAAATAGGACATCGTTTTGAAGAACAAGGTAATTAATTTTTAACAGCATGCTATTCTCT

Ace file of the UniGene sp_v3.0_unigene166219 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein 79 (Fragment) n=2 Tax=Funariaceae RepID=F5CAE5_FUNHY	-	-	1.0e-20	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Pentatricopeptide, putative, expressed	-	-	5.772e-08	-

Source	Gene names
Sma3	At1g08070; At1g11290; At1g18485; At1g20230; At1g59720; At2g02980; At2g22070; At3g03580; At3g24000; At3g26782; At3g49170; At4g02750; At4g30700; At4g33170; At4g33990; At4g37380; At5g06540; At5g46460; At5g48910; B1032F05.19; B1080A02.28; B21F5.9; DYW9; EMB22

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	acireductone synthase activity	GO:0043874	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	mRNA modification	GO:0016556	Biological Process	-
Sma3	L-methionine salvage from methylthioadenosine	GO:0019509	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	IPR010041	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G30700.1	Pentatricopeptide repeat (PPR) superfamily protein chr4:14962617-14964995 REVERSE LENGTH=792	1.0e-21	83%
RefSeq	Arabidopsis thaliana	NP_194799.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-21	83%
RefSeq	Populus trichocarpa	XP_002332376.1	predicted protein [Populus trichocarpa]	1.0e-21	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 77 and 77, your sequence is shorter than subject: 69 - 246

Fln protein: SEKLAIAFGLINTSLEAPIRIIKNxxVCEDCHTATKLISKIVGREIIVRDANRFHHFKDGLCSCGDYW*

Protein Length: 70

Fln nts: ACAGTGAGAAGCTAGCCATTGCTTTTGGGCTTATCAATACATCCCTTGAGGCTCCCATTCGGATAATCAAGAATxxxxxxGTCTGTGAAGACTGCCACACTGCTACCAAGCTAATTTCCAAAATTGTTGGACGAGAAATTATTGTGAGAGATGCCAACCGTTTCCATCATTTCAAGGATGGATTGTGTTCATGTGGGGATTATTGGTGACCGAAGTCAAAAAACAAAAGAAGAGAAGCTTTACTACAATGTCATGCATATTACTGGCAAGGTCGATACAAATTCAAATCTGATGCTATTCTGCATTTGCAGATGATGCAACATAGGCCTTATGACTGGCAAGGTTGATACAAATTAAAATCTGATACTATTCTGCATTTGCAGATGATGCGACATAGGCCTTATATCACCCTGGAGATCATGGTTTATTGCATCATCAATATAAATAGGACATCGTTTTGAAGAACAAGGTAATTAATTTTTAACAGCATGCTATTCTCT

Fln Alignment:

HLKU4M003G5FG2___SEKLAIAFGLINTSLEAPIRIIKNLRVCEDCHTATKLISKIVGREIIVRDANRFHHFKDGLCSCGDYW
D5AAE0________________SEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain