SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166168

Length: 392 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene166168
TGATTGACAGATTGCTCAAAATTGCCGATGAAGATAACGAACTCTTTCTGCTCAAGCTCCGCAGTAGAATCGACAAAGTCGCTATCGAAATACCCAAAATCGAGGTCCGCTATGAACACTTGAACGTGGATGCAGATGTATATGTTGGTAGCAGAGCACTGCCTACCATTCCCAACTTCACTTTAAATATGATGGAGGTATTTCCCAGTTTAGAATTCTGTGATTTTTATATAGAGATTATCGGTAGCAGAGCACTGCTACCATTCCCAACTTCACTTTAAATATGATGGAGGTATTTCCCAGTTTAGAATTCTGTGATTTTTATATAGAGATTATTGTACCAATGTTCCGAATAAACTGGTGTGGTGTGGTTTATTATGAATAAACTGGTG

Ace file of the UniGene sp_v3.0_unigene166168 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, subfamily G, member 22, group PDR protein PpABCG22 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TYR6_PHYPA	-	-	1.0e-19	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	ATP-binding cassette transporter, putative	-	-	1.687e-39	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	7.635e-32	-
Sma3	Polyamine-transporting ATPase.	EC:3.6.3.31	-	3.343e-06	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	4.297e-06	-

Source	Gene names
Sma3	ABC1; At2g36380; B1090H08.39; F1O11.1; GSVIVT00012733001; GSVIVT00016813001; GSVIVT00021655001; GSVIVT00022064001; GSVIVT00032522001; GSVIVT00032575001; GSVIVT00032578001; GSVIVT00032581001; GSVIVT00034307001; GSVIVT00034310001; GSVIVT00034318001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G59870.1	PEN3, PDR8, ATPDR8, ABCG36, ATABCG36 ABC-2 and Plant PDR ABC-type transporter family protein chr1:22034661-22039844 FORWARD LENGTH=1469	1.0e-17	55%
RefSeq	Arabidopsis thaliana	NP_176196.1	ABC transporter G family member 36 [Arabidopsis thaliana]	1.0e-17	55%
RefSeq	Populus trichocarpa	XP_002309596.1	predicted protein [Populus trichocarpa]	2.0e-24	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN70

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 228 aas, your sequence is shorter than subject: 93 - 443

Fln protein: IDRLLKIADEDNELFLLKLRSRIDKVAIEIPKIEVRYEHLNVDADVYVGSRALPTIPNFTLNMMEVFPSLEFCDFYIEIIGSRALLPFPTSL*

Protein Length: 94

Fln nts: TGATTGACAGATTGCTCAAAATTGCCGATGAAGATAACGAACTCTTTCTGCTCAAGCTCCGCAGTAGAATCGACAAAGTCGCTATCGAAATACCCAAAATCGAGGTCCGCTATGAACACTTGAACGTGGATGCAGATGTATATGTTGGTAGCAGAGCACTGCCTACCATTCCCAACTTCACTTTAAATATGATGGAGGTATTTCCCAGTTTAGAATTCTGTGATTTTTATATAGAGATTATCGGTAGCAGAGCACTGCTACCATTCCCAACTTCACTTTAAATATGATGGAGGTATTTCCCAGTTTAGAATTCTGTGATTTTTATATAGAGATTATTGTACCAATGTTCCGAATAAACTGGTGTGGTGTGGTTTATTATGAATAAACTGGTG

Fln Alignment:

HLKU4M003FT3SG___IDRLLKIADEDNELFLLKLRSRIDKVAIEIPKIEVRYEHLNVDADVYVGSRALPTIPNFTLNMME
B8LN70________________IDRLLGVTDQDNERFLLKLRQRLDGVGIIIPEIEIRFQDLNISADVYVGSRALPTLINWTVNIVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain