SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166054

Length: 517 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene166054
ATGGACCGCTTCCGAGACGGCCAAGACAAGGTGTTGATAACAACGAACGTTATCGCCCGCGGTATCGACATCCCGCAAGTGAATATGGTGGTGAACTACGACTTGCCGATGATGAGCGAGAGGCAACAAGAACCTGGGGTTAACGATCGGTTGGATCTCATCCCGGACGTCGAAACGTACATCCACAGAATAGGTCGTACGGGCCGGTTCGGCAGGAAGGGCATCTCAGTGAACTTCGTGCATAACCAAAAGTCGTTCCAAGACATGATGTCCATTCAGCAAGCCACCGGCAGGACGATCACGAAGGTGGAGACCGGCGATTATGACATGATGGATGAGCAACTGAGGGCAATCCTAAAGAAGAAATAAGTGGACATCAGAATCTCTCGAAGTGTACACCAACCAACTCTTAATCCGTTCAAGACCCCACAACACCACCGTAAATTCAATTTTTCCGCAACTTGTTTTGACACGTGTAATCCGGATGTTCGATGTAATTCAACGCGTTCCCATTTTG

Ace file of the UniGene sp_v3.0_unigene166054 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA helicase DBP5 [Coprinopsis cinerea okayama7#130] gb\|EAU85307.1\| ATP-dependent RNA helicase DBP5 [Coprinopsis cinerea okayama7#130]	-	-	1.0e-35	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19760.1	EIF4A-III eukaryotic initiation factor 4A-III chr3:6863790-6866242 FORWARD LENGTH=408	9.0e-19	53%
RefSeq	Arabidopsis thaliana	NP_188610.1	DEAD-box ATP-dependent RNA helicase 2 [Arabidopsis thaliana]	1.0e-18	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNL9

Fln msg: your sequence is shorter than subject: 123 - 507

Fln protein: MDRFRDGQDKVLITTNVIARGIDIPQVNMVVNYDLPMMSERQQEPGVNDRLDLIPDVETYIHRIGRTGRFGRKGISVNFVHNQKSFQDMMSIQQATGRTITKVETGDYDMMDEQLRAILKKK*

Protein Length: 124

Fln nts: ATGGACCGCTTCCGAGACGGCCAAGACAAGGTGTTGATAACAACGAACGTTATCGCCCGCGGTATCGACATCCCGCAAGTGAATATGGTGGTGAACTACGACTTGCCGATGATGAGCGAGAGGCAACAAGAACCTGGGGTTAACGATCGGTTGGATCTCATCCCGGACGTCGAAACGTACATCCACAGAATAGGTCGTACGGGCCGGTTCGGCAGGAAGGGCATCTCAGTGAACTTCGTGCATAACCAAAAGTCGTTCCAAGACATGATGTCCATTCAGCAAGCCACCGGCAGGACGATCACGAAGGTGGAGACCGGCGATTATGACATGATGGATGAGCAACTGAGGGCAATCCTAAAGAAGAAATAA___GTGGACATCAGAATCTCTCGAAGTGTACACCAACCAACTCTTAATCCGTTCAAGACCCCACAACACCACCGTAAATTCAATTTTTCCGCAACTTGTTTTGACACGTGTAATCCGGATGTTCGATGTAATTCAACGCGTTCCCATTTTG

Fln Alignment:

HLKU4M003F9M9X___FRDGQDKVLITTNVIARGIDIPQVNMVVNYDLPMMSERQQEPGVNDRLDLIPDVETYIHRIGRTGRFGRKGISVNFVHNQKSFQDMMSIQQATGRTITKVETGDYDMMDEQLR
B8LNL9________________FRTGLTKILISTDVLARGFDQAQVTLVVNFDLPV---KHASPD--------PDYEVYLHRIGRSGRFGRKGAAFNFICNDRDERIMSKIERYFERQVPEVPWDSEDAFEAVLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain