SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166028

Length: 344 nt

UniGene Fasta

>sp_v3.0_unigene166028
AGAAGATGGTCATCCACAGAGACATCAAGTCGAGCAACGTGCTGCTTGATTCGGAGCTCAATGGACGGCTCGGAGACTTCGGGCTCGCCCGGCTGTATGATCACGGGGAGAATCCTGAAACGACTCATGTGGTCGGAACCCTGGGGTACATAGCACCGGAGCTCATACACACCGGCAAGGCCACGCCTACCTCGGACGTGTTCAGCTTTGGGGCTCTGCTGTTGGAAGTGGCGTGTGGGAGGAAACCTATAGATCAGTCCAAGGACGCGGAGGAGATGATATTGGTGGAGTGGACATGGAAACTGTATGCCCAGGGGAGACTGCTGGATGCGGTGGATCCGAAG

Ace file of the UniGene sp_v3.0_unigene166028

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinase, putative n=1 Tax=Ricinus communis RepID=B9T428_RICCO	-	-	3.99931e-42	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Kinase, putative	-	-	1.114e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	2.414e-09	-
Sma3	Cyclin-dependent kinase.	EC:2.7.11.22	-	3.728e-12	-

Source	Gene names
Sma3	AT4g02410; AT4g02420; At1g15530; At1g70110; At2g37710; At2g43700; At3g45430; At3g45440; At3g53810; At3g59700; At3g59750; At4g02410; At4g02420; At5g01540; At5g55830; AthlecRK3; B1008E06.18; B1080A02.18; F20P5.16; F24G16.10; F24G16.20; F5K20_110; F7A7.60; F

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3		IPR001899	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Plastocyanin-like	IPR003245	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G37710.1	RLK receptor lectin kinase chr2:15814934-15816961 REVERSE LENGTH=675	1.4013e-45	65%
RefSeq	Arabidopsis thaliana	NP_181307.1	receptor lectin kinase [Arabidopsis thaliana]	1.4013e-45	65%
RefSeq	Populus trichocarpa	XP_002323515.1	predicted protein [Populus trichocarpa]	0.0	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 114 - 636

Fln protein: KMVIHRDIKSSNVLLDSELNGRLGDFGLARLYDHGENPETTHVVGTLGYIAPELIHTGKATPTSDVFSFGALLLEVACGRKPIDQSKDAEEMILVEWTWKLYAQGRLLDAVDPK

Protein Length: 115

Fln nts: AGAAGATGGTCATCCACAGAGACATCAAGTCGAGCAACGTGCTGCTTGATTCGGAGCTCAATGGACGGCTCGGAGACTTCGGGCTCGCCCGGCTGTATGATCACGGGGAGAATCCTGAAACGACTCATGTGGTCGGAACCCTGGGGTACATAGCACCGGAGCTCATACACACCGGCAAGGCCACGCCTACCTCGGACGTGTTCAGCTTTGGGGCTCTGCTGTTGGAAGTGGCGTGTGGGAGGAAACCTATAGATCAGTCCAAGGACGCGGAGGAGATGATATTGGTGGAGTGGACATGGAAACTGTATGCCCAGGGGAGACTGCTGGATGCGGTGGATCCGAAG

Fln Alignment:

HLKU4M003FOVHJ___KMVIHRDIKSSNVLLDSELNGRLGDFGLARLYDHGENPETTHVVGTLGYIAPELIHTGKATPTSDVFSFGALLLEVACGRKPIDQSKDAEEMILVEWTWKLYAQGRLLDAVDPK
A9NVC0________________KRVVHRDIKSSNVLLDSELNGRLGDFGLARLYDHAENPETTHVVGTLGYIAPELIQTGKATPSSDVFSFGVLLLEVACGRNPVDSLEDSERMILAEWAWELYTEGRLLEASDPK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain