SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166015

Length: 450 nt

UniGene Fasta

>sp_v3.0_unigene166015
GACCATCACGACAACACGGGTACTAACCGACAGCACACATAAGATGGCTCGCTTCCAGGAATACCAGATCATCGGGCGCCATCTGCCCTCAGAGGCCAACCCCACCCCCAAGATCTACCGTATGCGCATTTTTGCGCCCAACGAGGTCGTCGCCAAGTCACGGTTCTGGTACTTTCTCGGCAAGCTCCGCAAGATCAAGAAGGCGAACGGCGAGATCGTCTCGGTAAACCAGATCCACGAGAAGCGCCCACAGAAGGTCAAGAACTTCGGTATCTGGATCCGCTACGACTCGCGCTCCGGTACCCACAACATGTACAAGGAGTACCGTGAGATGTCTCGTGTCGCTGCTGTTGATGCCCTTTACCAAGATATGGCTGCCCGCCATCGATCGCGCTTCAGGCAGGTCCAGATCCTCAAGGTCGTTGAGATTGAGAAGACCGACGACGTCCG

Ace file of the UniGene sp_v3.0_unigene166015

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L18ae n=3 Tax=Pleosporineae RepID=B2W5B2_PYRTR	-	-	0.0	92%
FL-Next	sp=60S ribosomal protein L18a; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Ribosomal protein L18a	-	-	4.394e-13	-

Source	Gene names
Sma3	AT3G14600; At1g29965; At1g29970; At2g34480; At3g14600; CHLREDRAFT_146844; GSVIVT00003438001; GSVIVT00003441001; GSVIVT00005870001; MICPUCDRAFT_49713; MICPUN_57540; MIE1.10; OSJNBb0053D02.16; OSJNBb0063G05.12; OSTLU_32420; Os01g0666900; Os01g0752300; Os05g

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR002670	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G34480.1	Ribosomal protein L18ae/LX family protein chr2:14532916-14534161 REVERSE LENGTH=178	55%
RefSeq	Arabidopsis thaliana	NP_180995.1	60S ribosomal protein L18a-2 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002305713.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0B9

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 135 - 178

Fln protein: MARFQEYQIIGRHLPSEANPTPKIYRMRIFAPNEVVAKSRFWYFLGKLRKIKKANGEIVSVNQIHEKRPQKVKNFGIWIRYDSRSGTHNMYKEYREMSRVAAVDALYQDMAARHRSRFRQVQILKVVEIEKTDDV

Protein Length: 136

Fln nts: GACCATCACGACAACACGGGTACTAACCGACAGCACACATAAG_-_ATGGCTCGCTTCCAGGAATACCAGATCATCGGGCGCCATCTGCCCTCAGAGGCCAACCCCACCCCCAAGATCTACCGTATGCGCATTTTTGCGCCCAACGAGGTCGTCGCCAAGTCACGGTTCTGGTACTTTCTCGGCAAGCTCCGCAAGATCAAGAAGGCGAACGGCGAGATCGTCTCGGTAAACCAGATCCACGAGAAGCGCCCACAGAAGGTCAAGAACTTCGGTATCTGGATCCGCTACGACTCGCGCTCCGGTACCCACAACATGTACAAGGAGTACCGTGAGATGTCTCGTGTCGCTGCTGTTGATGCCCTTTACCAAGATATGGCTGCCCGCCATCGATCGCGCTTCAGGCAGGTCCAGATCCTCAAGGTCGTTGAGATTGAGAAGACCGACGACGTCCG

Fln Alignment:

HLKU4M003FZ4GP___RFQEYQIIGRHLPSEANPTPKIYRMRIFAPNEVVAKSRFWYFLGKLRKIKKANGEIVSVNQIHEKRPQKVKNFGIWIRYDSRSGTHNMYKEYREMSRVAAVDALYQDMAARHRSRFRQVQILKVVEI
A9P0B9________________RFHQYQVVGRSLPTPTDEHPKIFRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVQQMYDEMASRHRVRYPCIQIIKTATI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain