SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165980

Length: 303 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene165980
ACTTCATGATGTAGAGGAGGAGGATAAGGAGAACATTCTCTGTCACCATAGTGAGAAGTTGGCAATGGCTTTTGGCCTTATGAACACACCTCCAGGAGCACCTATAAGGATCTTTAAGAACCTTCGTGTCTGTGTCGACTGCCACACTGCCACCAAATTCATTTCCAGGATCACTGAACGAGAAATTATCATCAGGGATGGTAGTCGCTTTCACCGTTTCAAGGATAGTGTGTGTTCATGTGGAGAATATTGGTGATGCCAAGTGAAATTCGTAATATACAAGGATTAGTTTAGAGATTTATT

Ace file of the UniGene sp_v3.0_unigene165980 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein 78 (Fragment) n=1 Tax=Funaria hygrometrica RepID=F5CAE0_FUNHY	-	-	8.0e-27	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Pentatricopeptide repeat protein	-	-	0.0	-

Source	Gene names
Sma3	At1g20230; At1g47580; At1g56690; At1g68930; At2g22070; At2g41080; At3g12770; At3g23330; At3g26782; At3g46790; At3g57430; At4g02750; At4g16835; At4g30700; At4g33170; At4g33990; At4g37380; B1032F05.19; B1080A02.28; CRR2; DYW10; DYW9; EMB2758; F16N3.14; F17I

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G33170.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:15995701-15998673 REVERSE LENGTH=990	6.0e-30	65%
RefSeq	Arabidopsis thaliana	NP_195043.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	8.0e-30	65%
RefSeq	Populus trichocarpa	XP_002299387.1	predicted protein [Populus trichocarpa]	2.0e-32	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: your sequence is shorter than subject: 85 - 246

Fln protein: LHDVEEEDKENILCHHSEKLAMAFGLMNTPPGAPIRIFKNLRVCVDCHTATKFISRITEREIIIRDGSRFHRFKDSVCSCGEYW*

Protein Length: 86

Fln nts: ACTTCATGATGTAGAGGAGGAGGATAAGGAGAACATTCTCTGTCACCATAGTGAGAAGTTGGCAATGGCTTTTGGCCTTATGAACACACCTCCAGGAGCACCTATAAGGATCTTTAAGAACCTTCGTGTCTGTGTCGACTGCCACACTGCCACCAAATTCATTTCCAGGATCACTGAACGAGAAATTATCATCAGGGATGGTAGTCGCTTTCACCGTTTCAAGGATAGTGTGTGTTCATGTGGAGAATATTGGTGA___TGCCAAGTGAAATTCGTAATATACAAGGATTAGTTTAGAGATTTATT

Fln Alignment:

HLKU4M003F2U6S___LHDVEEEDKENILCHHSEKLAMAFGLMNTPPGAPIRIFKNLRVCVDCHTATKFXXXXXXXXXXXRDGSRFHRFKDSVCSCGEYW
D5AAE0________________LHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain