SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165880

Length: 437 nt

UniGene Fasta

>sp_v3.0_unigene165880
GGAGGGGTGAAGGAAACTCAGGAAATGTTAGACTTTTGTGGAGAGCATAACATCTGTTGCATGATAGAAAAGATTCTAGTGGAGTATGTAAACACAGCGATGGAAAGATTGGTGAAGGGAGATGTGAAGTACCGTTTCGTAATTGATGCTGCCCAAAGTTTCAAATCCCATGAATGAAGTGTGATGTTTTTAATTATCATTAGAGGTAGAAAATGAAGAACAACATAGGAGTAGGTTGCATGTGTGTGTCACAGAGTAATCTGTTTAGGCGAGATACGCAAGATTAACAAAAATGTCTAAATGAGTCGCAAGATTTGGAACCGCTACCTTCTGCTGCTGTCGTCAGAGACTCATAATGTGAGGGCTCTCCGGTCGTACTTTACCATTATAAATTTTAGGTTTTGAGCAAGTCATTGAAATGCCTTACTATGGATTTA

Ace file of the UniGene sp_v3.0_unigene165880

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable mannitol dehydrogenase n=2 Tax=Medicago sativa RepID=MTDH_MEDSA	-	-	2.0e-14	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Cinnamyl alcohol dehydrogenase-like protein	-	-	4.475e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cinnamyl-alcohol dehydrogenase.	EC:1.1.1.195	-	1.971e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phenylpropanoid biosynthesis	00940		1.971e-11	%
Sma3	Biosynthesis of phenylpropanoids	01061		1.971e-11	%
Sma3	Metabolic pathways	01100		1.971e-11	%
Sma3	Biosynthesis of secondary metabolites	01110		1.971e-11	%
Sma3	Mannitol dehydrogenase.	EC:1.1.1.255	-	0.0	-

Source	Gene names
Sma3	AT2G21890; AT4G37970; AT4G37980; AT4G39330; AT4g37970; At2g21890; At4g37970; At4g37980; At4g37990; At4g39330; CAD; CAD1; CAD3; CAD6; CAD7; CAD8; CADL1; CADL10; CADL11; CADL3; CADL4; CADL6; CADL7; CADL8; CHLREDRAFT_190503; CHLREDRAFT_190510; ELI3; ELI3-1;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	cinnamyl-alcohol dehydrogenase activity	GO:0045551	Molecular Function	-
Sma3	mannitol dehydrogenase activity	GO:0046029	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to bacterium	GO:0009617	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G37980.1	ELI3-1, ELI3, ATCAD7, CAD7 elicitor-activated gene 3-1 chr4:17852670-17854302 FORWARD LENGTH=357	1.0e-17	67%
RefSeq	Arabidopsis thaliana	NP_195511.1	cinnamyl alcohol dehydrogenase 7 [Arabidopsis thaliana]	2.0e-17	67%
RefSeq	Populus trichocarpa	XP_002300211.1	cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa]	6.0e-17	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQK7

Fln msg: your sequence is shorter than subject: 59 - 166

Fln protein: GGVKETQEMLDFCGEHNICCMIEKILVEYVNTAMERLVKGDVKYRFVIDAAQSFKSHE*

Protein Length: 60

Fln nts: GGAGGGGTGAAGGAAACTCAGGAAATGTTAGACTTTTGTGGAGAGCATAACATCTGTTGCATGATAGAAAAGATTCTAGTGGAGTATGTAAACACAGCGATGGAAAGATTGGTGAAGGGAGATGTGAAGTACCGTTTCGTAATTGATGCTGCCCAAAGTTTCAAATCCCATGAATGA___AGTGTGATGTTTTTAATTATCATTAGAGGTAGAAAATGAAGAACAACATAGGAGTAGGTTGCATGTGTGTGTCACAGAGTAATCTGTTTAGGCGAGATACGCAAGATTAACAAAAATGTCTAAATGAGTCGCAAGATTTGGAACCGCTACCTTCTGCTGCTGTCGTCAGAGACTCATAATGTGAGGGCTCTCCGGTCGTACTTTACCATTATAAATTTTAGGTTTTGAGCAAGTCATTGAAATGCCTTACTATGGATTTA

Fln Alignment:

HLKU4M003HEM8D___GGVKETQEMLDFCGEHNICCMIEKILVEYVNTAMERLVKGDVKYRFVIDAAQSFKS
A9NQK7________________GGVKETQEMLDFCGKHGISCMIENIPIDYVNTAMERLGKGDVKYRFVIDIARSFSS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain