SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165873

Length: 146 nt

UniGene Fasta

>sp_v3.0_unigene165873
GTCCAGGATGCAGCTGGATCGAGTTCAAGAACAGAGTCCATTCATTTGTTGTTGGAGACAGATCACACAAACAATCAGAACAGATATATGCAATGGTGGATTTATTGGCTGGGAAGATGAAAGATGCAGGGTATATGCCTGACAGG

Ace file of the UniGene sp_v3.0_unigene165873

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U8_CYCRE	-	-	2.0e-11	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%

Source	Gene names
Sma3	GSVIVT00000680001; PPR;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G62890.1	Pentatricopeptide repeat (PPR) superfamily protein chr3:23246168-23247973 FORWARD LENGTH=573	7.0e-12	51%
RefSeq	Arabidopsis thaliana	NP_191848.2	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	9.0e-12	51%
RefSeq	Populus trichocarpa	XP_002331286.1	predicted protein [Populus trichocarpa]	8.0e-14	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 87 aas, your sequence is shorter than subject: 48 - 246

Fln protein: PGCSWIEFKNRVHSFVVGDRSHKQSEQIYAMVDLLAGKMKDAGYMPDR

Protein Length: 49

Fln nts: GTCCAGGATGCAGCTGGATCGAGTTCAAGAACAGAGTCCATTCATTTGTTGTTGGAGACAGATCACACAAACAATCAGAACAGATATATGCAATGGTGGATTTATTGGCTGGGAAGATGAAAGATGCAGGGTATATGCCTGACAGG

Fln Alignment:

HLKU4M003G2SQD___PGCSWIEFKNRVHSFVVGDRSHKQSEQIYAMVDLLAGKMKDAGYMPD
D5AAE0________________PGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain