SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165866

Length: 460 nt

UniGene Fasta

>sp_v3.0_unigene165866
ATCTATCTTTCCGGAATTGGTAGGTGCTGGGACGGCGAAAGCCAACCGTCCCAGCCATCGCGTCATGCACTTCTATCTACTCCTAGGTTAGAGGACAAATTGAGAGTATCATCTCAGTTGTTTGAAATTTGAAATTCCAATTCAATGAGCTGAAATCTGCCAAATGAGCTGAAATCTGCCACCAGGAACTTTAGGCCAGAGAGCGTTCTTGGGAGAGGTATGTTCGGCTATGTTTTCAAAGGTTGGATAGAAGAGAATGGGACGGCCGCCGTCAAGCCTGGCACTGGCTTGACTGTTGCAGTCAAGAGACTCAACCCTGACGGGTTACAGAGTCACAAGGAATGGCAGGCAGAAGTCAACTTCCTTGGTGAGCTTTGCCATGCAAATCTGGTCAAACTCATTGGATATTGTATTGAAGAAGATCAGAGGTTGCTCGCATATGAATATATGCCAAGGGGTA

Ace file of the UniGene sp_v3.0_unigene165866

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine protein kinase-like protein n=1 Tax=Glycine max RepID=C6ZRY6_SOYBN	-	-	6.02558e-44	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Protein kinase APK1B, chloroplast, putative	-	-	1.19e-31	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	2.0e-19	-

Source	Gene names
Sma3	ABC1041; ACIK1; APK1A; APK1B; APK2a; APK2b; AT3G09830; At1g07570; At1g14370; At1g14370/F14L17.14; At1g61590; At1g74490; At1g76360/F15M4_14; At2g02800; At2g02800/T20F6.6; At2g07180; At2g17220; At2g17220/T23A1.8; At2g26290; At2g28930; At2g39660; At3g01300;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G15080.1	Protein kinase superfamily protein chr5:4886414-4888555 FORWARD LENGTH=493	67%
RefSeq	Arabidopsis thaliana	NP_197012.1	protein kinase family protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002311881.1	predicted protein, partial [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: Distance to subject end: 259 aas, your sequence is shorter than subject: 153 - 431

Fln protein: IYLSGIGRCWDGESQPSQPSRHALLSTPRLEDKLRVSSQLFEI*NSNSMS*NLPNELKSATRNFRPESVLGRGMFGYVFKGWIEENGTAAVKPGTGLTVAVKRLNPDGLQSHKEWQAEVNFLGELCHANLVKLIGYCIEEDQRLLAYEYMPRG

Protein Length: 154

Fln nts: ATCTATCTTTCCGGAATTGGTAGGTGCTGGGACGGCGAAAGCCAACCGTCCCAGCCATCGCGTCATGCACTTCTATCTACTCCTAGGTTAGAGGACAAATTGAGAGTATCATCTCAGTTGTTTGAAATTTGAAATTCCAATTCAATGAGCTGAAATCTGCCAAATGAGCTGAAATCTGCCACCAGGAACTTTAGGCCAGAGAGCGTTCTTGGGAGAGGTATGTTCGGCTATGTTTTCAAAGGTTGGATAGAAGAGAATGGGACGGCCGCCGTCAAGCCTGGCACTGGCTTGACTGTTGCAGTCAAGAGACTCAACCCTGACGGGTTACAGAGTCACAAGGAATGGCAGGCAGAAGTCAACTTCCTTGGTGAGCTTTGCCATGCAAATCTGGTCAAACTCATTGGATATTGTATTGAAGAAGATCAGAGGTTGCTCGCATATGAATATATGCCAAGGGGTA

Fln Alignment:

HLKU4M003FM1W8___SQPSRHALLSTPRLEDKLRVSSQLFEIXXXXXXXXXLPNELKSATRNFRPESVLGRGMFGYVFKGWIEENGTAAVKPGTGLTVAVKRLNPDGLQSHKEWQAEVNFLGELCHANLVKLIGYCIEEDQRLLAYEYMPRG
B8LKY1________________STASTESIVSTPRLEEQLRVSSQLLKFTF---------NELKSATRNFRPESVLGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNPDGLQGHKEWLAEVNFLGQLRHANLVKLIGYCIEDNQRLLVYEYMPRG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain