SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165790

Length: 387 nt

UniGene Fasta

>sp_v3.0_unigene165790
CACCTGAGTATTTCCTGCATGGGATTGTCGATGAGAAAACTGATGTCTTTTCATTTGGGGTGCTGTTACTTGAGATTATCTCAGGTCGTAGACCAGTTGATGCTTCTGAGCAGAACATATTGTCTTGGGCCAAACCCTTAATGGAGTCTGGAAACATTCATGAACTAGTAGATCCACGGCTTCAAGGTCAATATGACACTCATCAGATGCAGAGAATGGTGTTAACTGCTTCACTCTGCGTGTTACAGTTATTGATAGAAGGTCAAAGTAATGAGCTAGCGGATTATTGGAAAATGCCAACATCCTTGATAAATGAAGATGATGATGACTTCTGGGGATTTGGGGAATCAGAATCTGAATGTGCTGATGTGAATAGAACCATATAAT

Ace file of the UniGene sp_v3.0_unigene165790

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase-like protein [Arabidopsis thaliana] sp\|Q5XF57.1\|Y5576_ARATH RecName: Full=Probable receptor-like serine/threonine-protein kinase At5g57670 gb\|AAU90049.1\| At5g57670 [Arabidopsis thaliana] gb\|AAW30041.1\| At5g57670 [Arabidopsis thaliana] gb\|AE	-	-	2.0e-29	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%

Source	Gene names
Sma3	At3g05140; At5g10520; At5g18910; At5g18910/F17K4_160; At5g35960; At5g57670; At5g65530/K21L13_3; F12B17_130; GSVIVT00006102001; GSVIVT00011813001; GSVIVT00016739001; GSVIVT00019857001; GSVIVT00031352001; GSVIVT00031465001; LOC_Os03g62314; LOC_Os03g62340; M

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	endomembrane system	GO:0012505	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	defense response, incompatible interaction	GO:0009814	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Tubulin	IPR000217	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Nucleoside diphosphate kinase	IPR001564	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G57670.2	Protein kinase superfamily protein chr5:23360531-23363694 REVERSE LENGTH=579	4.0e-36	50%
RefSeq	Arabidopsis thaliana	NP_001078762.1	protein kinase-like protein [Arabidopsis thaliana]	6.0e-36	50%
RefSeq	Populus trichocarpa	XP_002331667.1	predicted protein [Populus trichocarpa]	9.99967e-42	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9D1

Fln msg: your sequence is shorter than subject: 128 - 347

Fln protein: PEYFLHGIVDEKTDVFSFGVLLLEIISGRRPVDASEQNILSWAKPLMESGNIHELVDPRLQGQYDTHQMQRMVLTASLCVLQLLIEGQSNELADYWKMPTSLINEDDDDFWGFGESESECADVNRTI*

Protein Length: 129

Fln nts: CACCTGAGTATTTCCTGCATGGGATTGTCGATGAGAAAACTGATGTCTTTTCATTTGGGGTGCTGTTACTTGAGATTATCTCAGGTCGTAGACCAGTTGATGCTTCTGAGCAGAACATATTGTCTTGGGCCAAACCCTTAATGGAGTCTGGAAACATTCATGAACTAGTAGATCCACGGCTTCAAGGTCAATATGACACTCATCAGATGCAGAGAATGGTGTTAACTGCTTCACTCTGCGTGTTACAGTTATTGATAGAAGGTCAAAGTAATGAGCTAGCGGATTATTGGAAAATGCCAACATCCTTGATAAATGAAGATGATGATGACTTCTGGGGATTTGGGGAATCAGAATCTGAATGTGCTGATGTGAATAGAACCATATAA___T

Fln Alignment:

HLKU4M003F408D___PEYFLHGIVDEKTDVFSFGVLLLEIISGRRPVDASEQNILSWAKPLMESGNIHELVDPRLQGQYDTHQMQRMVLTASLC-------------VLQLLIEGQSNELADYWKMPTSLINEDDDDFWGFGESESECADVNRTI
D5A9D1________________PEYFLHGIVDEKTDVFSFGVLLLEIISGRRPIDASEQNILSWAKPLMESGNIHELVDPQLRGQYDIHQMQRMVLTASLCVRHSAIWRPSMIEVLQLLIEGQSDELADCWKMSISLINEDDDDFWGFEESESGIAATNGAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain