SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165784

Length: 266 nt

UniGene Fasta

>sp_v3.0_unigene165784
CATAGAAGCATTTGGTGCAGACCAGTTTGATGGTGAAGACCCAGAAGAGAACAGATATAGGAGTTCCTTCTTTAATTGGTGGTACTTTGGACAGTGTTTTGGTGCTTTGATTGCACTTACGGTACTTCTTTACGTTGAAGACTATATAGGATGGGGTGTGGGGTTTGGCATCCCAACTGTAGCTATGGCTCTGGCTCTTTCTCTCTTTCTTTATGGTTCTAAGTTTTATAGGCACCAAGTGATTTTCAGCAGTCCACTCAATGGCC

Ace file of the UniGene sp_v3.0_unigene165784

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to oligopeptide transporter, putative n=1 Tax=Vitis vinifera RepID=UPI0001985618	-	-	5.0e-25	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Chromosome chr18 scaffold_122, whole genome shotgun sequence	-	-	3.637e-15	-

Source	Gene names
Sma3	At1g22540; At3g54140; At5g01180; B1026C12.10; F12K8.12; F24B22.100; F7J8_160; GSVIVT00001822001; GSVIVT00001823001; GSVIVT00001825001; GSVIVT00001840001; GSVIVT00001842001; GSVIVT00001844001; GSVIVT00001845001; GSVIVT00021470001; NRT1.2; OJ1301_G07.2; OJ1

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAK-box/P21-Rho-binding	IPR000095	-	-
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22540.1	Major facilitator superfamily protein chr1:7964202-7966222 FORWARD LENGTH=557	2.0e-27	55%
RefSeq	Arabidopsis thaliana	NP_173670.2	putative peptide/nitrate transporter [Arabidopsis thaliana]	3.0e-27	55%
RefSeq	Populus trichocarpa	XP_002327274.1	predicted protein [Populus trichocarpa]	5.0e-28	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWU3

Fln msg: Distance to subject end: 331 aas, your sequence is shorter than subject: 88 - 604

Fln protein: IEAFGADQFDGEDPEENRYRSSFFNWWYFGQCFGALIALTVLLYVEDYIGWGVGFGIPTVAMALALSLFLYGSKFYRHQVIFSSPLNG

Protein Length: 89

Fln nts: CATAGAAGCATTTGGTGCAGACCAGTTTGATGGTGAAGACCCAGAAGAGAACAGATATAGGAGTTCCTTCTTTAATTGGTGGTACTTTGGACAGTGTTTTGGTGCTTTGATTGCACTTACGGTACTTCTTTACGTTGAAGACTATATAGGATGGGGTGTGGGGTTTGGCATCCCAACTGTAGCTATGGCTCTGGCTCTTTCTCTCTTTCTTTATGGTTCTAAGTTTTATAGGCACCAAGTGATTTTCAGCAGTCCACTCAATGGCC

Fln Alignment:

HLKU4M003FPJN1___IEAFGADQFDGEDPEENRYRSSFFNWWYFGQCFGALIALTVLLYVEDYIGWGVGFGIPTVAMALALSLFLYGSKFYRHQVIFSSPL
A9NWU3________________LQAFGADQFDERDPEERKYRSSFFNWWYFGMCSGLVVSISVLMYIQENVGWGLGFGIPTMAMAIALTVFLCGTRLYRHKLPGASPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain