SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165768

Length: 203 nt

UniGene Fasta

>sp_v3.0_unigene165768
CTCTACATTGTGACATCTGTGTACTTTTCTGGTGTAATGGTTCGGCTTATGCTAGTGCTGGCTCCAGCAGCTTGTATTTTATCTGGCATTGCTCTTTCTGAAGCTTTTACAGTACTAACACGATCAGTCAAATTTCAGCTCTCTCTCTCATTTGAAGATGCTTCAACAGTCAAATCAGAAACAGTTCCAAATGAATTGAAGGA

Ace file of the UniGene sp_v3.0_unigene165768

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dolichyl-diphosphooligosaccharide--protein glycosyltransferase [Arabidopsis thaliana] gb\|AAL07040.1\| putative oligosaccharyl transferase STT3 [Arabidopsis thaliana] gb\|AED92738.1\| dolichyl-diphosphooligosaccharide--protein glycosyltransferase [Arabidopsis	-	-	2.0e-14	65%
FL-Next	tr=Putative uncharacterized protein Sb09g025920; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	74%

Source	Gene names
Sma3	At5g19690; GSVIVT00016681001; Os05g0519900; OsI_20658; OsJ_19234; P0483D07.5; P0599F04.15; PHYPADRAFT_200115; POPTRDRAFT_578521; RCOM_1050370;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	oligosaccharyl transferase activity	GO:0004576	Molecular Function	-
Sma3	protein glycosylation	GO:0006486	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligosaccharyl transferase, STT3 subunit	IPR003674	-	0.0	-
Sma3	MPPN	IPR007846	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G19690.1	STT3A staurosporin and temperature sensitive 3-like A chr5:6652649-6658214 FORWARD LENGTH=779	4.0e-19	65%
RefSeq	Arabidopsis thaliana	NP_568380.1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase [Arabidopsis thaliana]	5.0e-19	65%
RefSeq	Populus trichocarpa	XP_002325019.1	predicted protein [Populus trichocarpa]	4.0e-21	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5Z1B6

Fln msg: Distance to subject end: 314 aas, your sequence is shorter than subject: 67 - 782

Fln protein: LYIVTSVYFSGVMVRLMLVLAPAACILSGIALSEAFTVLTRSVKFQLSLSFEDASTVKSETVPNELK

Protein Length: 68

Fln nts: CTCTACATTGTGACATCTGTGTACTTTTCTGGTGTAATGGTTCGGCTTATGCTAGTGCTGGCTCCAGCAGCTTGTATTTTATCTGGCATTGCTCTTTCTGAAGCTTTTACAGTACTAACACGATCAGTCAAATTTCAGCTCTCTCTCTCATTTGAAGATGCTTCAACAGTCAAATCAGAAACAGTTCCAAATGAATTGAAGGA

Fln Alignment:

HLKU4M003FKR7Q___LYIVTSVYFSGVMVRLMLVLAPAACILSGIALSEAFTVLTRSVKFQLSLSFEDASTVKSETVP
C5Z1B6________________LYLVTAVYFSGVMVRLMLVLAPAACILSGIALSEVFSVLTRSIKFQLSKFFDDSPTSSGDSSP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain