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UniGene Name: sp_v3.0_unigene165741
Length: 223 nt
 UniGene Fasta
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| >sp_v3.0_unigene165741
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Ace file of the UniGene sp_v3.0_unigene165741
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA | - | - | 4.0e-29 | 83% |
| FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 83% |
| Sma3 | Nucleosome/chromatin assembly factor group | - | - | 1.937e-09 | - |
| Source | Gene names |
|---|---|
| Sma3 | At2g16780; At4g35050; At5g58230; B1274F11.21; B1394A07.14; CHLREDRAFT_131412; GSVIVT00030810001; GSVIVT00036121001; LOC_Os03g43890; M4E13.110; MCK7.10; MICPUCDRAFT_49651; MICPUN_86547; MSI1; MSI2; MSI3; NFC1501; NFC901; NFC902; NFC903; NFC904; NURF-55; OS |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
| Sma3 | chromatin remodeling complex | GO:0016585 | Cellular Component | 0.0 | - |
| Sma3 | CUL4 RING ubiquitin ligase complex | GO:0080008 | Cellular Component | 0.0 | - |
| Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
| Sma3 | DNA replication | GO:0006260 | Biological Process | 0.0 | - |
| Sma3 | regulation of gene expression by genetic imprinting | GO:0006349 | Biological Process | 0.0 | - |
| Sma3 | regulation of transcription, DNA-dependent | GO:0006355 | Biological Process | 0.0 | - |
| Sma3 | cell proliferation | GO:0008283 | Biological Process | 0.0 | - |
| Sma3 | pollen development | GO:0009555 | Biological Process | 0.0 | - |
| Sma3 | embryo development ending in seed dormancy | GO:0009793 | Biological Process | 0.0 | - |
| Sma3 | regulation of flower development | GO:0009909 | Biological Process | 0.0 | - |
| Sma3 | trichome differentiation | GO:0010026 | Biological Process | 0.0 | - |
| Sma3 | seed coat development | GO:0010214 | Biological Process | 0.0 | - |
| Sma3 | chromatin modification | GO:0016568 | Biological Process | 0.0 | - |
| Sma3 | heterochromatin assembly | GO:0031507 | Biological Process | 0.0 | - |
| Sma3 | positive regulation of cell cycle | GO:0045787 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | WD40 repeat | IPR001680 | - | 0.0 | - |
| Sma3 | Phosphopantetheine attachment site | IPR006162 | - | 0.0 | - |
| Sma3 | WD40/YVTN repeat-like-containing domain | IPR015943 | - | 0.0 | - |
| Sma3 | WD40-repeat-containing domain | IPR017986 | - | 0.0 | - |
| Sma3 | WD40 repeat, conserved site | IPR019775 | - | 0.0 | - |
| Sma3 | IPR019782 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT5G58230.1 | MSI1, MEE70, ATMSI1 Transducin/WD40 repeat-like superfamily protein chr5:23556112-23557994 FORWARD LENGTH=424 | 9.0e-33 | 75% |
| RefSeq | Arabidopsis thaliana | NP_200631.1 | histone-binding protein RBBP4 [Arabidopsis thaliana] | 1.0e-32 | 75% |
| RefSeq | Populus trichocarpa | XP_002320581.1 | nucleosome/chromatin assembly factor group [Populus trichocarpa] | 3.0e-32 | 74% |
| Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: D5AAF8
Fln msg: Distance to subject end: 38 aas, your sequence is shorter than subject: 74 - 401
Fln protein:
K
Protein Length:
75
Fln nts:
A
Fln Alignment:
HLKU4M003GAWFN___KLSCSLHTFSNHMEEVFQIEWSPMNETILASSGGDRRLMVWDLRRIGDEQTSEDAEDGPPELIFIHGGHTSKIS
D5AAF8________________KLSCSLHTFSNHTEQVFQIEWSPTNETILASSGADRRLMVWDLARIG--ETPEDEEDGPPELLFVHGGHTSKIS
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
