SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165710

Length: 463 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene165710 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ACYPI007254 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WSB7_ACYPI	-	-	2.8026e-45	79%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	52%

Source	Gene names
Sma3	At3g20390; CHLREDRAFT_121371; CHRD; GSVIVT00027326001; GtTIP; MICPUCDRAFT_43856; MICPUN_78501; Os07g0516200; OsI_26193; OsJ_24449; P0048D08.132; P0650C03.11; PHYPADRAFT_121716; POPTRDRAFT_569140; POPTRDRAFT_829920; RCOM_0082210; VITISV_026634;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	YjgF-like protein	IPR006056	-	-
Sma3	YjgF/Yer057p/UK114 family	IPR006175	-	-
Sma3	Endoribonuclease L-PSP/chorismate mutase-like	IPR013813	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G20390.1	endoribonuclease L-PSP family protein chr3:7110227-7111695 REVERSE LENGTH=187	4.0e-32	52%
RefSeq	Arabidopsis thaliana	NP_188674.1	endoribonuclease L-PSP family protein [Arabidopsis thaliana]	5.0e-32	52%
RefSeq	Populus trichocarpa	XP_002317599.1	predicted protein [Populus trichocarpa]	1.0e-31	52%

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain