SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165703

Length: 535 nt

UniGene Fasta

>sp_v3.0_unigene165703
CTCAATGTTTTGCAGCTGAGCGGCATAGAAATATGTGAGGTATCCTTTCCTGAAGGTGTTTGTCCAAACCTTGAACATCTATCCATCACTTTCTGTAATGACCTGGTTGAAGTGAGAGCATTGCCAACAACATTGATATCTCTAGATTTAAAGGGGTGTCGTGCATTGATGAAAACAGGAGGGCTTTGTGGTCTTGCAAACCTCAAAACACTGAACTTGAGTGGGTGTGATAACCTACAAACAGATGCTCTGCCAGGGCTTCAAGCTCTAATTTCTTCAAATTGTACATTATTAAACACTCAACTTGACACTTCCGAAGGCAAGGAGGAGGATGCTTTGTTGGAGGTGTTTTTGCGACTATATTCACTTTCAATCGCAACCAGAGTGTTAACAGTGCAGACACGACTCTTTTTAATGAGTGTGTTCATTGACTATTTTAAAGTATTCGGTCTTTTATGGACTGTAATTCAAACGGAGTGCGAACTGTCAATCTGTTACATGGGCTGAATTTTTGCTCGCTGAATTTGATGCATAT

Ace file of the UniGene sp_v3.0_unigene165703

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J6_PINTA	-	-	5.0e-16	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1B3

Fln msg: your sequence is shorter than subject: 169 - 384

Fln protein: LNVLQLSGIEICEVSFPEGVCPNLEHLSITFCNDLVEVRALPTTLISLDLKGCRALMKTGGLCGLANLKTLNLSGCDNLQTDALPGLQALISSNCTLLNTQLDTSEGKEEDALLEVFLRLYSLSIATRVLTVQTRLFLMSVFIDYFKVFGLLWTVIQTECELSICYMG*

Protein Length: 170

Fln nts: CTCAATGTTTTGCAGCTGAGCGGCATAGAAATATGTGAGGTATCCTTTCCTGAAGGTGTTTGTCCAAACCTTGAACATCTATCCATCACTTTCTGTAATGACCTGGTTGAAGTGAGAGCATTGCCAACAACATTGATATCTCTAGATTTAAAGGGGTGTCGTGCATTGATGAAAACAGGAGGGCTTTGTGGTCTTGCAAACCTCAAAACACTGAACTTGAGTGGGTGTGATAACCTACAAACAGATGCTCTGCCAGGGCTTCAAGCTCTAATTTCTTCAAATTGTACATTATTAAACACTCAACTTGACACTTCCGAAGGCAAGGAGGAGGATGCTTTGTTGGAGGTGTTTTTGCGACTATATTCACTTTCAATCGCAACCAGAGTGTTAACAGTGCAGACACGACTCTTTTTAATGAGTGTGTTCATTGACTATTTTAAAGTATTCGGTCTTTTATGGACTGTAATTCAAACGGAGTGCGAACTGTCAATCTGTTACATGGGCTGA___ATTTTTGCTCGCTGAATTTGATGCATAT

Fln Alignment:

HLKU4M003FXNMQ___LNVLQLSGIEICEVSFPEGVCPNLEHLSITFCNDLVEVRALPTTLISLDLKGCRALMKTGGLCGLANLKTLNLSGCDNLQTDALPGLQALISSNCTLLNTQ
A9P1B3________________LNSLNLSNTRITEISFGEGVCPVLESLALERCNDLVEVGALPTTLTLLDLMDCCALKKITGLRGLAKLRYLYMSGCKEI--EELPGLGVWELNNLENLNLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain