SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165601

Length: 553 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene165601
AAATGCTTTCGTCCGGCCTTACAACTCATCAGCTACCCAAGGGGGTTTGAAGCTTAGGGTTGTGTCGACTATCAGTTCCCTGATAGCCGCATCTGCCGGGCACTTTCTTTTACAACAGATAATTTCTAATCACCTTGAATTGCAGAGCCTCGTTCTCACTGATTTTGATGACCAGGGGGTTCTCTGTATGGGAAAAGATCAGTTACAGGAGCTTCACGATAAACCCCTTGCGGCTTCTGCTTCCTCAAACCAGACCCAGGTCCCTGCCCTCAACATGAAATTGTGGTACGCTCCTTATGTGGAGCTTCCCGGTGGCATGGCCCTGAAGGGCGCAACGAGAGTTGCGATTCGACCCAGTGACCAGCCGGTGTGAAAAGAAAGCGATGAATTTGTTGCCGGTGCTTTCGACGAGCCTTTCAAGACCACGGCTAGCCTTCTCGTCCGAAGACGAACTTATCTCCTTGAGATGAATTCCTTCCAAGGCTCCAGAAACTCTATGAGGGTTTTAACTGATATGAATAGGGTCTTATATGAAAAGGGTATGTGTTAAAGT

Ace file of the UniGene sp_v3.0_unigene165601 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box protein [Arabidopsis thaliana] sp\|Q9FNK5.1\|FB285_ARATH RecName: Full=F-box protein At5g46170 dbj\|BAB08262.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL49842.1\| unknown protein [Arabidopsis thaliana] gb\|AAN13195.1\| unknown protein [Arabido	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	F-box domain containing protein	-	-	3.718e-16	-

Source	Gene names
Sma3	At1g30200; At4g18380; At5g46170; F12P21.1; F28J12.40; GSVIVT00022244001; GSVIVT00028329001; LOC_Os03g20500; MCL19.23; OJ1005_B11.4; OSJNBa0088I06.3; Os01g0770400; Os01g0812200; Os03g0321300; Os05g0490300; Os05g0510400; OsI_03898; OsI_04173; OsI_11347; OsI

Source	GOs	Term	Type	e value	Identity
Sma3	heat acclimation	GO:0010286	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G46170.1	F-box family protein chr5:18715638-18716825 REVERSE LENGTH=395	66%
RefSeq	Arabidopsis thaliana	NP_199429.1	F-box protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002305042.1	f-box family protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW74

Fln msg: your sequence is shorter than subject: 183 - 361

Fln protein: NAFVRPYNSSATQGGLKLRVVSTISSLIAASAGHFLLQQIISNHLELQSLVLTDFDDQGVLCMGKDQLQELHDKPLAASASSNQTQVPALNMKLWYAPYVELPGGMALKGATRVAIRPSDQPV*KESDEFVAGAFDEPFKTTASLLVRRRTYLLEMNSFQGSRNSMRVLTDMNRVLYEKGMC*

Protein Length: 184

Fln nts: AAATGCTTTCGTCCGGCCTTACAACTCATCAGCTACCCAAGGGGGTTTGAAGCTTAGGGTTGTGTCGACTATCAGTTCCCTGATAGCCGCATCTGCCGGGCACTTTCTTTTACAACAGATAATTTCTAATCACCTTGAATTGCAGAGCCTCGTTCTCACTGATTTTGATGACCAGGGGGTTCTCTGTATGGGAAAAGATCAGTTACAGGAGCTTCACGATAAACCCCTTGCGGCTTCTGCTTCCTCAAACCAGACCCAGGTCCCTGCCCTCAACATGAAATTGTGGTACGCTCCTTATGTGGAGCTTCCCGGTGGCATGGCCCTGAAGGGCGCAACGAGAGTTGCGATTCGACCCAGTGACCAGCCGGTGTGAAAAGAAAGCGATGAATTTGTTGCCGGTGCTTTCGACGAGCCTTTCAAGACCACGGCTAGCCTTCTCGTCCGAAGACGAACTTATCTCCTTGAGATGAATTCCTTCCAAGGCTCCAGAAACTCTATGAGGGTTTTAACTGATATGAATAGGGTCTTATATGAAAAGGGTATGTGTTAA___AGT

Fln Alignment:

HLKU4M003F63SZ___TQGGLKLRVVSTISSLIAASAGHFLLQQIISNHLELQSLVLTDFDDQGVLCMGKDQLQELHDKPLAASASSNQTQVPALNMKLWYAPYVELPGGMALKGATRVAIRPSDQPV*KESDEFVAGAFDEPFKTTASLLVRRRTYLLEMNSF
A9NW74________________TDGGLKLRVVWTISSLIAASARHYLLQQIISDHPTLQNLVLTDADGQGMLCMGKAQLREFRDKPLAASATASRTQVPALNMKLWYAPYLELPEGGGMEGATLVSIRPSDRPIKKDAEAFLAGAFDEPFGAAAKEMVKKRTYLLEMNSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain