SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165495

Length: 137 nt

UniGene Fasta

>sp_v3.0_unigene165495
CTTTCGCTTCTCGGGTCAAACGGAGAGAGGAGTAACACACATGTTAAATGTCAATCGTTGCTCACATGTTGCAATGCCGGGAGAAACGGTCATGGAAGAAGCAAAACTCTGTACCGAAAGGTACCTGCGGAACGCTC

Ace file of the UniGene sp_v3.0_unigene165495

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Levopimaradiene synthase, chloroplastic n=2 Tax=Pinus RepID=TPSD1_PINTA	-	-	3.0e-15	86%
FL-Next	sp=Levopimaradiene synthase, chloroplastic; Pinus taeda (Loblolly pine).	-	-	0.0	86%
Sma3	Copalyl diphosphate synthase	-	-	4.313e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Levopimaradiene synthase.	EC:4.2.3.32	-	9.017e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Diterpenoid biosynthesis	00904		9.017e-09	%
Sma3	Biosynthesis of secondary metabolites	01110		9.017e-09	%
Sma3	Copalyl diphosphate synthase.	EC:5.5.1.12	-	4.358e-17	-

Source	KEGGs	Term	e value	Identity
Sma3	Diterpenoid biosynthesis	00904	4.358e-17	%
Sma3	Biosynthesis of terpenoids and steroids	01062	4.358e-17	%
Sma3	Metabolic pathways	01100	4.358e-17	%
Sma3	Biosynthesis of secondary metabolites	01110	4.358e-17	%

Source	Gene names
Sma3	ABS; LPS; TPS-ISO; TPS-LAS; ac22; ag22;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	carbon-oxygen lyase activity, acting on phosphates	GO:0016838	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	abietadiene synthase activity	GO:0050554	Molecular Function	-
Sma3	copalyl diphosphate synthase activity	GO:0050559	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Prenyltransferase/squalene oxidase	IPR001330	-	-
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q50EK2

Fln msg: Distance to subject end: 389 aas, your sequence is shorter than subject: 45 - 850

Fln protein: FRFSGQTERGVTHMLNVNRCSHVAMPGETVMEEAKLCTERYLRNA

Protein Length: 46

Fln nts: CTTTCGCTTCTCGGGTCAAACGGAGAGAGGAGTAACACACATGTTAAATGTCAATCGTTGCTCACATGTTGCAATGCCGGGAGAAACGGTCATGGAAGAAGCAAAACTCTGTACCGAAAGGTACCTGCGGAACGCTC

Fln Alignment:

HLKU4M003GFXL1___FRFSGQTERGVTHMLNVNRCSHVAMPGETVMEEAKLCTERYLRNA
Q50EK2________________FCFLGQTQRGVTDMLNVNRCSHVAFPGETIMEEAKLCTERYLRNA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain