SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165458

Length: 275 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene165458
TCCTGATTCAATTGGTCTAGAAATCGAGAAGAAGTGCCAAACTGTCTTCCCCTTCAAAATGTGTTCATTAGAAAAGTAAAGGTCTTGAAGAAGCCCAAGTTCGACTTGACCAAGTTGATGGAGTTGCACGGTGACACCGTTGAGGATACCGGAGCTGCCTTGGACAAGGTTGCTGCTGCTACCACTGTGAAGGCCCTTAAGGGTGCTGGTGGCCGTCTGTAAATTCATTGTTTTCAGTGTACCCTTATTAATCACGTTAATCCAGCCATACCAAA

Ace file of the UniGene sp_v3.0_unigene165458 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S3a n=1 Tax=Babesia bovis RepID=RS3A_BABBO	-	-	4.0e-10	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	40S ribosomal protein S3a	-	-	7.65e-18	-

Source	Gene names
Sma3	40SRPS3a; AT4G34670; At4g34670; BIS289; CHLREDRAFT_168484; CYC07; GSVIVT00020038001; LOC_Os03g10340; MICPUN_95475; OJ1115_D03.49; OJ1756_H07.11; OSTLU_28528; Os02g0287000; Os03g0200500; Os12g0406200; OsI_06784; OsI_10409; OsJ_06287; OsJ_09804; OsJ_35850;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S3Ae	IPR001593	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Glycoside hydrolase, family 43	IPR006710	-	-
Sma3	Ribosomal protein S3Ae, conserved site	IPR018281	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002314671.1	predicted protein [Populus trichocarpa]	1.0e-10	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNV8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 74 - 245

Fln protein: S*FNWSRNREEVPNCLPLQNVFIRKVKVLKKPKFDLTKLMELHGDTVEDTGAALDKVAAATTVKALKGAGGRL*

Protein Length: 75

Fln nts: TCCTGATTCAATTGGTCTAGAAATCGAGAAGAAGTGCCAAACTGTCTTCCCCTTCAAAATGTGTTCATTAGAAAAGTAAAGGTCTTGAAGAAGCCCAAGTTCGACTTGACCAAGTTGATGGAGTTGCACGGTGACACCGTTGAGGATACCGGAGCTGCCTTGGACAAGGTTGCTGCTGCTACCACTGTGAAGGCCCTTAAGGGTGCTGGTGGCCGTCTGTAA___ATTCATTGTTTTCAGTGTACCCTTATTAATCACGTTAATCCAGCCATACCAAA

Fln Alignment:

HLKU4M003GQUMH___PLQNVFIRKVKVLKKPKFDLTKLMELHGDTVE
A9NNV8________________PLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain