SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165454

Length: 387 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene165454
AATGCATGAGAGCTTCTCATCCCTTTTCAAGTACACAATGTTTTGGATTCACTTCTTATAAGCAAGCTAGCTTTTAGCTACTACATTGAGATAAGGCCACTGGTTAAGCCTACAAGGAGATCATGCGGATGAATATTGGCAACTATGAATGGCATGAGCTTTTTCCACAAGCAAGAAAGAACATTGGGGTGGTGATTTCCATATGGTCTCCAATAATTCTTGTCTATTTCATGGATACTCAAATTTGGTATTCCATATTCTCAACTATAGTTGGAGGTATCTATGGTGCCTTTCGTCATCTTGGTGAGATACGAACATTGGGGATGCTAAGGTCTCGATTCCAATCTTTGCCTGGAGCTTTCAATGCACGCCTAGTGCCACCAATAG

Ace file of the UniGene sp_v3.0_unigene165454 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Callose synthase 2 n=5 Tax=Arabidopsis RepID=CALS2_ARATH	-	-	9.99967e-42	75%
FL-Next	sp=Callose synthase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	81%
Sma3	1,3-beta-glucan synthase	-	-	7.363e-28	-

Source	ECs	Term	Type	e value	Identity
Sma3	1,3-beta-glucan synthase.	EC:2.4.1.34	-	2.145e-40	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		2.145e-40	%

Source	Gene names
Sma3	At1g05570; At1g06490; At2g13680; At2g31960; At3g14570; At3g59100; At5g13000; At5g36870; CALS1; CALS2; CALS3; CALS4; CALS5; CALS6; CALS7; CALS8; CalS3; F12K11.17; F13J11.3; F17J16.150; F22D22.29; F3F20.1; F5H8.14; GSL11; GSL12; GSL2; GSL3; GSL4; GSL6; GSL7

Source	GOs	Term	Type	Identity
Sma3	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	-
Sma3	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	regulation of cell shape	GO:0008360	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	pollen wall assembly	GO:0010208	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 48	IPR003440	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G31960.1	ATGSL03, GSL03, ATGSL3 glucan synthase-like 3 chr2:13589545-13600066 FORWARD LENGTH=1950	2.8026e-45	75%
RefSeq	Arabidopsis thaliana	NP_001189653.1	callose synthase [Arabidopsis thaliana]	2.8026e-45	75%
RefSeq	Populus trichocarpa	XP_002330894.1	predicted protein [Populus trichocarpa]	7.00649e-44	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SL03

Fln msg: Separated hits, possible frame ERROR between 49 and 52, and overlapping frame ERROR between 117 and 114, Distance to subject end: 1170 aas, your sequence is shorter than subject: 129 - 1950

Fln protein: MHESFSSLFKYTMFWxxLLISKLAFSYYIEIRPLVKxxxxIMRMNIGNYEWHELFPQARKNIGVVISIWSPIILVYFMDTQIWYSIFSTIVGGIYGAFRHLGEIRTLGMLRSRFQSLPGAFNARLVPPI

Protein Length: 130

Fln nts: AATGCATGAGAGCTTCTCATCCCTTTTCAAGTACACAATGTTTTGGATxxxACTTCTTATAAGCAAGCTAGCTTTTAGCTACTACATTGAGATAAGGCCACTGGTTAAGCCxxxxxxxxxGATCATGCGGATGAATATTGGCAACTATGAATGGCATGAGCTTTTTCCACAAGCAAGAAAGAACATTGGGGTGGTGATTTCCATATGGTCTCCAATAATTCTTGTCTATTTCATGGATACTCAAATTTGGTATTCCATATTCTCAACTATAGTTGGAGGTATCTATGGTGCCTTTCGTCATCTTGGTGAGATACGAACATTGGGGATGCTAAGGTCTCGATTCCAATCTTTGCCTGGAGCTTTCAATGCACGCCTAGTGCCACCAATAG

Fln Alignment:

HLKU4M003GNAAA___MHESFSSLFKYTMFWIxLLISKLAFSYYIEIRPLVKPTxEIMRMNIGNYEWHELFPQARKNIGVVISIWSPIILVYFMDTQIWYSIFSTIVGGIYGAFRHLGEIRTLGMLRSRFQSLPGAFNARLVP
Q9SL03________________MHESALSLFKYTMFWVxLLISKLAFSFYAEIKPLVKPTxDIMRVHISVYRWHEFFPHAKSNMGVVIALWSPVILVYFMDTQIWYAIVSTLVGGLNGAFRRLGEIRTLGMLRSRFQSLPEAFNACLVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain