SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165391

Length: 312 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene165391
ATTGCCTCGTGGCTTGTTAAGATGCTCCTCAAAAGAGGCTACACCGTGAGAGGAGTAGTTCGCACCAACCCAAACGATGATGGGTGGAAGTATGCACATCTTAGAGTGTTGGAAGGAGCAAAAGAGAATCTTGAGCTTGTGAGAGCTGATATTCTCGATTACCAGAGCTTAGTAGTAGCCATCCGAGGCTGCCATGGTGTATTTCATGTGGCTACCGCTATGAGCAATAACCCCGAAGAGGTAATGGCGCCAGCGGTAGAAGGAACGAAGAATGTGATGGAGGTTTGCGCAGAAATGGGAGTGAAGCGCGTA

Ace file of the UniGene sp_v3.0_unigene165391 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cinnamoyl-CoA reductase n=3 Tax=Pinaceae RepID=B3VKE9_9CONI	-	-	1.0e-29	63%
FL-Next	tr=Cinnamoyl-CoA reductase; Pinus taeda (Loblolly pine).	-	-	0.0	63%
Sma3	Cinnamoyl-CoA reductase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydrokaempferol 4-reductase.	EC:1.1.1.219	-	4.309e-21	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Flavonoid biosynthesis	00941		4.309e-21	%
Sma3	Biosynthesis of phenylpropanoids	01061		4.309e-21	%
Sma3	Metabolic pathways	01100		4.309e-21	%
Sma3	Biosynthesis of secondary metabolites	01110		4.309e-21	%
Sma3	Cinnamoyl-CoA reductase.	EC:1.2.1.44	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AT1G15950; AT4g35420; AespDFR-S3; AespDFR-S4; AespDFR-S5; At1g09500; At1g15950; At1g51410; At1g76470; At1g80820; At2g33590; At2g33600; CAD1; CAD2; CCR; CCR1; CCR2; CCR3; CCR4; CCR5; CCR6; CCR7; CCRL2; CCRL5; DFR; F14G6.7; F14J9.16; F14J9.17; F15M4.3; F23A

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	3-beta-hydroxy-delta5-steroid dehydrogenase activity	GO:0003854	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	cinnamoyl-CoA reductase activity	GO:0016621	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	steroid biosynthetic process	GO:0006694	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	eIF4-gamma/eIF5/eIF2-epsilon	IPR003307	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80820.1	CCR2, ATCCR2 cinnamoyl coa reductase chr1:30370646-30372460 FORWARD LENGTH=332	1.0e-30	56%
RefSeq	Arabidopsis thaliana	NP_178197.1	cinnamoyl-CoA reductase [Arabidopsis thaliana]	2.0e-30	56%
RefSeq	Populus trichocarpa	XP_002332078.1	cinnamoyl CoA reductase [Populus trichocarpa]	1.0e-32	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q8VZH7

Fln msg: Distance to subject end: 202 aas, your sequence is shorter than subject: 104 - 324

Fln protein: IASWLVKMLLKRGYTVRGVVRTNPNDDGWKYAHLRVLEGAKENLELVRADILDYQSLVVAIRGCHGVFHVATAMSNNPEEVMAPAVEGTKNVMEVCAEMGVKRV

Protein Length: 105

Fln nts: ATTGCCTCGTGGCTTGTTAAGATGCTCCTCAAAAGAGGCTACACCGTGAGAGGAGTAGTTCGCACCAACCCAAACGATGATGGGTGGAAGTATGCACATCTTAGAGTGTTGGAAGGAGCAAAAGAGAATCTTGAGCTTGTGAGAGCTGATATTCTCGATTACCAGAGCTTAGTAGTAGCCATCCGAGGCTGCCATGGTGTATTTCATGTGGCTACCGCTATGAGCAATAACCCCGAAGAGGTAATGGCGCCAGCGGTAGAAGGAACGAAGAATGTGATGGAGGTTTGCGCAGAAATGGGAGTGAAGCGCGTA

Fln Alignment:

HLKU4M003GCJVP___IASWLVKMLLKRGYTVRGVVRTNPNDDGWKYAHLRVLEGAKENLELVRADILDYQSLVVAIRGCHGVFHVATAMSNNPEEVMAPAVEGTKNVMEVCAEMGVKRV
Q8VZH7________________IASWLVKLLLERGYTVRGTVR-NPEDQ--KNAHLKQLEGAEERLTLVKADLMDYNSLLNAINGCQGVFHVASPVTDDPEEMVEPAVNGTKNVLDACAVAGVRRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain