SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165324

Length: 420 nt

UniGene Fasta

>sp_v3.0_unigene165324
CATGTCAATGGTGGCATGTACATGATTTAAAAATATTAATAAACTATTTTTGTATAGTGTTTAAATAAACTAGAAACATAACGTTAAATTTTATGTTAATTAGCTCGGATTAATTTGCGTTGTTTCTAATGTTTTATATACTACGAAGATCATCGCGCAAGCGAGTTTTGATAGGACATTTAAGAGTATGAGCACTATCGAAGAACGCGTAAAGAAAATTATTGCTGAGCAATTAGGTGTTAAACAGGAAGAAGTATTAAATAGTGCTTCTTTCGTTGATGATCTTGGCGCTGATTCTCTTGACACCGTTGAGTTAGTAATGGCACTCGAAGAGGAATTCAATACTGAGATTCCAGATGAAGAGGCGGAAAAGATTACTACTGTTCAGTTGGCTATTGATTTTATCAATAACGCTGGTTC

Ace file of the UniGene sp_v3.0_unigene165324

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AcpP n=7 Tax=Bacteria RepID=D4GC48_PANAM	-	-	2.0e-38	74%
FL-Next	sp=Acyl carrier protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Acyl carrier protein	-	-	5.262e-38	-

Source	Gene names
Sma3	ACP3; GSVIVT00025038001; Grc000111; OSJNBa0007A06.12; OSJNBa0039A21.2; OSTLU_26769; Os05g0377000; OsJ_18342; PHATRDRAFT_9709; POPTRDRAFT_742720; THAPSDRAFT_262796; acl1; acpA; acpP;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	acyl carrier activity	GO:0000036	Molecular Function	-
Sma3	phosphopantetheine binding	GO:0031177	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Acyl carrier protein (ACP)	IPR003231	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Phosphopantetheine-binding	IPR006163	-	-
Sma3	Acyl carrier protein-like	IPR009081	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G65290.1	mtACP2 mitochondrial acyl carrier protein 2 chr1:24249088-24250366 REVERSE LENGTH=126	1.0e-17	49%
RefSeq	Arabidopsis thaliana	NP_176708.1	NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1 [Arabidopsis thaliana]	1.0e-17	49%
RefSeq	Populus trichocarpa	XP_002328960.1	predicted protein [Populus trichocarpa]	4.0e-20	54%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU14

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 77 - 124

Fln protein: MSTIEERVKKIIAEQLGVKQEEVLNSASFVDDLGADSLDTVELVMALEEEFNTEIPDEEAEKITTVQLAIDFINNAG

Protein Length: 78

Fln nts: CATGTCAATGGTGGCATGTACATGATTTAAAAATATTAATAAACTATTTTTGTATAGTGTTTAAATAAACTAGAAACATAACGTTAAATTTTATGTTAATTAGCTCGGATTAATTTGCGTTGTTTCTAATGTTTTATATACTACGAAGATCATCGCGCAAGCGAGTTTTGATAGGACATTTAAGAGT_-_ATGAGCACTATCGAAGAACGCGTAAAGAAAATTATTGCTGAGCAATTAGGTGTTAAACAGGAAGAAGTATTAAATAGTGCTTCTTTCGTTGATGATCTTGGCGCTGATTCTCTTGACACCGTTGAGTTAGTAATGGCACTCGAAGAGGAATTCAATACTGAGATTCCAGATGAAGAGGCGGAAAAGATTACTACTGTTCAGTTGGCTATTGATTTTATCAATAACGCTGGTTC

Fln Alignment:

HLKU4M003G21XU___TFKSMSTIEERVKKIIAEQLGVKQEEVLNSASFVDDLGADSLDTVELVMALEEEFNTEIPDEEAEKITTVQLAIDFI
A9NU14________________TFLDKSQVTDRVISVIKACQKVDPAKVSPAADFQKDLGLDSLDTVELVMALEEEFAFEIPDNEADKINSVNIAVDFI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain