SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165305

Length: 433 nt

UniGene Fasta

>sp_v3.0_unigene165305
GCTACGACGCCACGCGCGCATATGCTCAATCTAAACTAGGCAAATATTCTACACACAAAAGAAGCTTGCGTTGAGACTCGAGAATGCAGAAAATAGAAGGCCAATGTGACAGCAAATTCTATCCATCCAGGCATTGTAAGGACCAGAATCACTAGAGACCGCGACGGACTTCTCACAGATTTGGTTTTCTTCCTTGCATCAAAACTTCTCAAATCGATTTCTCAGGCGGCATCTACAACCTGCTATGTTGCAGTTCATCCGAATTTGAAAGCCATATCAGGAAAATACTTTGCAGACTGCAATGAAGTATCTGCTTCTAACGTTGCAAATGATCCAAATAAAGCTATGGAATTGTGGAGAGACAGCGAAGCTATGATAGCGTCATATGTATAAACTTTGTTAAAATAATAAATGAAATAGGCAACCTGTACAC

Ace file of the UniGene sp_v3.0_unigene165305

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative alcohol dehydrogenase PAN2 n=2 Tax=Oryza sativa RepID=Q658H8_ORYSJ	-	-	1.0e-32	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Short-chain dehydrogenase, putative	-	-	2.626e-06	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protochlorophyllide reductase.	EC:1.3.1.33	-	1.901e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Porphyrin and chlorophyll metabolism	00860	1.901e-06	%
Sma3	Metabolic pathways	01100	1.901e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	1.901e-06	%

Source	Gene names
Sma3	AT4g24050; At1g64590; At4g24050; At5g50130; GSVIVT00006681001; LOC_Os03g02460; OSJNBa0090O10.25; Os03g0115700; Os06g0129100; OsI_09730; OsI_21471; OsJ_09167; OsJ_19979; P0538C01.13; POPTRDRAFT_179856; POPTRDRAFT_414845; POPTRDRAFT_773082; POPTRDRAFT_80800

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G24050.1	NAD(P)-binding Rossmann-fold superfamily protein chr4:12497287-12499661 FORWARD LENGTH=332	3.0e-39	56%
RefSeq	Arabidopsis thaliana	NP_194136.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	3.0e-39	56%
RefSeq	Populus trichocarpa	XP_002299444.1	predicted protein, partial [Populus trichocarpa]	9.0e-39	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTW7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 131 - 322

Fln protein: ATTPRAHMLNLN*ANILHTKEACVETRECRK*KANVTANSIHPGIVRTRITRDRDGLLTDLVFFLASKLLKSISQAASTTCYVAVHPNLKAISGKYFADCNEVSASNVANDPNKAMELWRDSEAMIASYV*

Protein Length: 132

Fln nts: GCTACGACGCCACGCGCGCATATGCTCAATCTAAACTAGGCAAATATTCTACACACAAAAGAAGCTTGCGTTGAGACTCGAGAATGCAGAAAATAGAAGGCCAATGTGACAGCAAATTCTATCCATCCAGGCATTGTAAGGACCAGAATCACTAGAGACCGCGACGGACTTCTCACAGATTTGGTTTTCTTCCTTGCATCAAAACTTCTCAAATCGATTTCTCAGGCGGCATCTACAACCTGCTATGTTGCAGTTCATCCGAATTTGAAAGCCATATCAGGAAAATACTTTGCAGACTGCAATGAAGTATCTGCTTCTAACGTTGCAAATGATCCAAATAAAGCTATGGAATTGTGGAGAGACAGCGAAGCTATGATAGCGTCATATGTATAA___ACTTTGTTAAAATAATAAATGAAATAGGCAACCTGTACAC

Fln Alignment:

HLKU4M003FI6Y1___ANILHTKEACVETRECRK*KANVTANSIHPGIVRTRITRDRDGLLTDLVFFLASKLLKSISQAASTTCYVAVHPNLKAISGKYFADCNEVSASNVANDPNKAMELWRDSEAMIASYV
A9NTW7________________ANILHTKELSLRLE---KMKANVTANSIHPGIVRTRITRDRDGLITDLVFFLASKLLKSIPQAASTTCYVAVHPNLKSISGKYFADCNEASASSVANDPNKAMELWRDSDAIVASYV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain