SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165209

Length: 128 nt

UniGene Fasta

>sp_v3.0_unigene165209
CCAAGAGTGTATTAGGATTGATACACTCAGATATCTGCAGACCCATGTCCACTAAATCTCTTAGTGGTGCCGAGTACTTCCTTACCTTCATTGATGACCAATCAAGGAAATCTTGGATTTATTTTCTG

Ace file of the UniGene sp_v3.0_unigene165209

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH	-	-	1.0e-08	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%

Source	Gene names
Sma3	VITISV_005279; VITISV_013624; VITISV_037104;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 235 aas, your sequence is shorter than subject: 42 - 407

Fln protein: KSVLGLIHSDICRPMSTKSLSGAEYFLTFIDDQSRKSWIYFL

Protein Length: 43

Fln nts: CCAAGAGTGTATTAGGATTGATACACTCAGATATCTGCAGACCCATGTCCACTAAATCTCTTAGTGGTGCCGAGTACTTCCTTACCTTCATTGATGACCAATCAAGGAAATCTTGGATTTATTTTCTG

Fln Alignment:

HA8LWWM01DK4Y9___KSVLGLIHSDICRPMSTKSLSGAEYFLTFIDDQSRKSWIYFL
B8LKX7________________KTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain